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High-accuracy SNV calling for bacterial isolates using deep learning with AccuSNV.

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Title: High-accuracy SNV calling for bacterial isolates using deep learning with AccuSNV.
Authors: Liao H; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA., Conwill A; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA., Light-Maka I; Max Planck Institute for Infection Biology; Berlin 10117, Germany.; Charité-Universitätsmedizin Berlin, Berlin 10117, Germany., Fenk M; Max Planck Institute for Infection Biology; Berlin 10117, Germany.; Humboldt-Universität zu Berlin, Faculty of Life Sciences, Berlin, Germany., Mitchell AH; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA., Qu EB; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA., Torrillo P; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA., Baker JS; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA., Key FM; Max Planck Institute for Infection Biology; Berlin 10117, Germany., Lieberman TD; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard; Cambridge, MA 02139, USA.; Ragon Institute of MGH, MIT, and Harvard; Cambridge, MA 02139, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Sep 29. Date of Electronic Publication: 2025 Sep 29.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Liao+H%22">Liao H</searchLink>; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.<br /><searchLink fieldCode="AU" term="%22Conwill+A%22">Conwill A</searchLink>; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.<br /><searchLink fieldCode="AU" term="%22Light-Maka+I%22">Light-Maka I</searchLink>; Max Planck Institute for Infection Biology; Berlin 10117, Germany.; Charité-Universitätsmedizin Berlin, Berlin 10117, Germany.<br /><searchLink fieldCode="AU" term="%22Fenk+M%22">Fenk M</searchLink>; Max Planck Institute for Infection Biology; Berlin 10117, Germany.; Humboldt-Universität zu Berlin, Faculty of Life Sciences, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Mitchell+AH%22">Mitchell AH</searchLink>; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.<br /><searchLink fieldCode="AU" term="%22Qu+EB%22">Qu EB</searchLink>; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.<br /><searchLink fieldCode="AU" term="%22Torrillo+P%22">Torrillo P</searchLink>; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.<br /><searchLink fieldCode="AU" term="%22Baker+JS%22">Baker JS</searchLink>; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.<br /><searchLink fieldCode="AU" term="%22Key+FM%22">Key FM</searchLink>; Max Planck Institute for Infection Biology; Berlin 10117, Germany.<br /><searchLink fieldCode="AU" term="%22Lieberman+TD%22">Lieberman TD</searchLink>; Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard; Cambridge, MA 02139, USA.; Ragon Institute of MGH, MIT, and Harvard; Cambridge, MA 02139, USA.
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  Data: <searchLink fieldCode="JN" term="%22101680187%22">BioRxiv : the preprint server for biology</searchLink> [bioRxiv] 2025 Sep 29. <i>Date of Electronic Publication: </i>2025 Sep 29.
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        Value: 10.1101/2025.09.26.678787
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              Text: 2025 Sep 29
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