Knowledge-informed multimodal cfDNA analysis improves sensitivity and generalization in cancer detection.

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Title: Knowledge-informed multimodal cfDNA analysis improves sensitivity and generalization in cancer detection.
Authors: De Falco A; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy., Grisolia P; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA., Giuffrida R; Istituto Oncologico del Mediterraneo, Viagrande (CT), Italy., Iannarone C; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy., Graziano C; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy., Scrima M; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy., Cossu AM; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy., Tufano R; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy., Yow MV; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA., Brown CM; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA., Bajaj P; Myeloma Division, Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL., Bocchetti M; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.; Department of Life Science, Health, and Health Professions, Link University, Rome, Italy., Nuzzo PV; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA., Morgillo F; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy., Caraglia F; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy., Delle Corte MC; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy., Guida GD; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy., Troiani T; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy., Ciardiello F; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy., Rizzo MR; Department of Advanced Clinical and Surgical Sciences, University of Campania 'Luigi Vanvitelli', 80138 Naples, Italy., Fiorelli A; Thoracic Surgery Unit, University of Campania 'Luigi Vanvitelli', Naples, Italy., Giorgiano NM; Thoracic Surgery Unit, University of Campania 'Luigi Vanvitelli', Naples, Italy., Arcaniolo D; Department of Woman, Child and General and Specialized Surgery and Urology Unit, University of Campania 'Luigi Vanvitelli', Naples, 80138, Italy., Rosa GD; Department of Woman, Child and General and Specialized Surgery and Urology Unit, University of Campania 'Luigi Vanvitelli', Naples, 80138, Italy., De Sio M; Department of Woman, Child and General and Specialized Surgery and Urology Unit, University of Campania 'Luigi Vanvitelli', Naples, 80138, Italy., Covre A; University of Siena, Italy, and Center for Immuno-Oncology, Department of Oncology, University Hospital of Siena, Siena, Italy., Di Giacomo AM; University of Siena, Italy, and Center for Immuno-Oncology, Department of Oncology, University Hospital of Siena, Siena, Italy.; NIBIT Foundation Onlus, Italy., Calabrò L; University of Ferrara, Italy., Fontana P; Istituto Oncologico del Mediterraneo, Viagrande (CT), Italy., Mare M; Istituto Oncologico del Mediterraneo, Viagrande (CT), Italy., Landgren O; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Myeloma Division, Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL., Green DJ; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Division of Transplantation and Cellular Therapy, Department of Medicine, University of Miami, Miami, FL, USA., Lesokhin A; Division of Hematology and Oncology, Memorial Sloan Kettering Cancer Center/Weill Cornell Medical College, New York City, NY, USA., Coffey DG; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Myeloma Division, Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL., Merchant N; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Division of Surgical Oncology, Department of Surgery, University of Miami Miller School of Medicine, Miami, FL, USA., Datta J; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Division of Surgical Oncology, Department of Surgery, University of Miami Miller School of Medicine, Miami, FL, USA., Forte S; Istituto Oncologico del Mediterraneo, Viagrande (CT), Italy., Maio M; University of Siena, Italy, and Center for Immuno-Oncology, Department of Oncology, University Hospital of Siena, Siena, Italy.; NIBIT Foundation Onlus, Italy., Caraglia M; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy., Ceccarelli M; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Department of Public Health Sciences, University of Miami Miller School of Medicine, Miami, FL, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Oct 21. Date of Electronic Publication: 2025 Oct 21.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: Knowledge-informed multimodal cfDNA analysis improves sensitivity and generalization in cancer detection.
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  Data: <searchLink fieldCode="AU" term="%22De+Falco+A%22">De Falco A</searchLink>; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.<br /><searchLink fieldCode="AU" term="%22Grisolia+P%22">Grisolia P</searchLink>; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.<br /><searchLink fieldCode="AU" term="%22Giuffrida+R%22">Giuffrida R</searchLink>; Istituto Oncologico del Mediterraneo, Viagrande (CT), Italy.<br /><searchLink fieldCode="AU" term="%22Iannarone+C%22">Iannarone C</searchLink>; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy.<br /><searchLink fieldCode="AU" term="%22Graziano+C%22">Graziano C</searchLink>; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.<br /><searchLink fieldCode="AU" term="%22Scrima+M%22">Scrima M</searchLink>; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.<br /><searchLink fieldCode="AU" term="%22Cossu+AM%22">Cossu AM</searchLink>; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy.<br /><searchLink fieldCode="AU" term="%22Tufano+R%22">Tufano R</searchLink>; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.<br /><searchLink fieldCode="AU" term="%22Yow+MV%22">Yow MV</searchLink>; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.<br /><searchLink fieldCode="AU" term="%22Brown+CM%22">Brown CM</searchLink>; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.<br /><searchLink fieldCode="AU" term="%22Bajaj+P%22">Bajaj P</searchLink>; Myeloma Division, Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL.<br /><searchLink fieldCode="AU" term="%22Bocchetti+M%22">Bocchetti M</searchLink>; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.; Department of Life Science, Health, and Health Professions, Link University, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Nuzzo+PV%22">Nuzzo PV</searchLink>; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.<br /><searchLink fieldCode="AU" term="%22Morgillo+F%22">Morgillo F</searchLink>; Department of Precision Medicine, University of Campania 'L. 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Vanvitelli', 80138 Naples, Italy.<br /><searchLink fieldCode="AU" term="%22Rizzo+MR%22">Rizzo MR</searchLink>; Department of Advanced Clinical and Surgical Sciences, University of Campania 'Luigi Vanvitelli', 80138 Naples, Italy.<br /><searchLink fieldCode="AU" term="%22Fiorelli+A%22">Fiorelli A</searchLink>; Thoracic Surgery Unit, University of Campania 'Luigi Vanvitelli', Naples, Italy.<br /><searchLink fieldCode="AU" term="%22Giorgiano+NM%22">Giorgiano NM</searchLink>; Thoracic Surgery Unit, University of Campania 'Luigi Vanvitelli', Naples, Italy.<br /><searchLink fieldCode="AU" term="%22Arcaniolo+D%22">Arcaniolo D</searchLink>; Department of Woman, Child and General and Specialized Surgery and Urology Unit, University of Campania 'Luigi Vanvitelli', Naples, 80138, Italy.<br /><searchLink fieldCode="AU" term="%22Rosa+GD%22">Rosa GD</searchLink>; Department of Woman, Child and General and Specialized Surgery and Urology Unit, University of Campania 'Luigi Vanvitelli', Naples, 80138, Italy.<br /><searchLink fieldCode="AU" term="%22De+Sio+M%22">De Sio M</searchLink>; Department of Woman, Child and General and Specialized Surgery and Urology Unit, University of Campania 'Luigi Vanvitelli', Naples, 80138, Italy.<br /><searchLink fieldCode="AU" term="%22Covre+A%22">Covre A</searchLink>; University of Siena, Italy, and Center for Immuno-Oncology, Department of Oncology, University Hospital of Siena, Siena, Italy.<br /><searchLink fieldCode="AU" term="%22Di+Giacomo+AM%22">Di Giacomo AM</searchLink>; University of Siena, Italy, and Center for Immuno-Oncology, Department of Oncology, University Hospital of Siena, Siena, Italy.; NIBIT Foundation Onlus, Italy.<br /><searchLink fieldCode="AU" term="%22Calabrò+L%22">Calabrò L</searchLink>; University of Ferrara, Italy.<br /><searchLink fieldCode="AU" term="%22Fontana+P%22">Fontana P</searchLink>; Istituto Oncologico del Mediterraneo, Viagrande (CT), Italy.<br /><searchLink fieldCode="AU" term="%22Mare+M%22">Mare M</searchLink>; Istituto Oncologico del Mediterraneo, Viagrande (CT), Italy.<br /><searchLink fieldCode="AU" term="%22Landgren+O%22">Landgren O</searchLink>; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Myeloma Division, Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL.<br /><searchLink fieldCode="AU" term="%22Green+DJ%22">Green DJ</searchLink>; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Division of Transplantation and Cellular Therapy, Department of Medicine, University of Miami, Miami, FL, USA.<br /><searchLink fieldCode="AU" term="%22Lesokhin+A%22">Lesokhin A</searchLink>; Division of Hematology and Oncology, Memorial Sloan Kettering Cancer Center/Weill Cornell Medical College, New York City, NY, USA.<br /><searchLink fieldCode="AU" term="%22Coffey+DG%22">Coffey DG</searchLink>; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Myeloma Division, Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL.<br /><searchLink fieldCode="AU" term="%22Merchant+N%22">Merchant N</searchLink>; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Division of Surgical Oncology, Department of Surgery, University of Miami Miller School of Medicine, Miami, FL, USA.<br /><searchLink fieldCode="AU" term="%22Datta+J%22">Datta J</searchLink>; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Division of Surgical Oncology, Department of Surgery, University of Miami Miller School of Medicine, Miami, FL, USA.<br /><searchLink fieldCode="AU" term="%22Forte+S%22">Forte S</searchLink>; Istituto Oncologico del Mediterraneo, Viagrande (CT), Italy.<br /><searchLink fieldCode="AU" term="%22Maio+M%22">Maio M</searchLink>; University of Siena, Italy, and Center for Immuno-Oncology, Department of Oncology, University Hospital of Siena, Siena, Italy.; NIBIT Foundation Onlus, Italy.<br /><searchLink fieldCode="AU" term="%22Caraglia+M%22">Caraglia M</searchLink>; BIOGEM Institute of Molecular Biology and Genetics, Ariano Irpino, Italy.; Department of Precision Medicine, University of Campania 'L. Vanvitelli', 80138 Naples, Italy.<br /><searchLink fieldCode="AU" term="%22Ceccarelli+M%22">Ceccarelli M</searchLink>; Sylvester Comprehensive Cancer Center and Department of Public Health Sciences, Miller School of Medicine, University of Miami, Miami, FL, USA.; Department of Public Health Sciences, University of Miami Miller School of Medicine, Miami, FL, USA.
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