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ImmunoNX: a robust bioinformatics workflow to support personalized neoantigen vaccine trials.

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Title: ImmunoNX: a robust bioinformatics workflow to support personalized neoantigen vaccine trials.
Authors: Singhal K; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Schmidt E; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Kiwala S; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Goedegebuure SP; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.; Department of Surgery, Washington University School of Medicine, Saint Louis, MO, USA., Miller CA; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA., Xia H; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Cotto KC; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Li J; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Yao J; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Hendrickson L; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Richters MM; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Hoang MH; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Khanfar M; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Risch I; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., O'Laughlin S; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA., Myers N; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.; Department of Surgery, Washington University School of Medicine, Saint Louis, MO, USA., Vickery T; Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO, USA., Davies SR; Department of Surgery, Washington University School of Medicine, Saint Louis, MO, USA., Du F; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA., Mooney TB; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA., Coffman A; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Chang GS; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA., Hundal J; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA., Garza JE; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA., McLellan MD; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA., McMichael JF; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Maruska J; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA., Inabinett WB; Jaime Leandro Foundation for Therapeutic Cancer Vaccines, Chapel Hill, NC, USA., Hoos WA; Jaime Leandro Foundation for Therapeutic Cancer Vaccines, Chapel Hill, NC, USA., Karchin R; Johns Hopkins Department of Biomedical Engineering, Baltimore, MD, United States., Johanns TM; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA., Dunn GP; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.; Department of Surgery, Washington University School of Medicine, Saint Louis, MO, USA.; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA.; Jaime Leandro Foundation for Therapeutic Cancer Vaccines, Chapel Hill, NC, USA.; Johns Hopkins Department of Biomedical Engineering, Baltimore, MD, United States.; Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO, USA., Pachynski RK; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA., Fehniger TA; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA., Ward JP; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA., Foltz JA; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA., Gillanders WE; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.; Department of Surgery, Washington University School of Medicine, Saint Louis, MO, USA., Griffith OL; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA., Griffith M; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA.
Source: ArXiv [ArXiv] 2025 Dec 09. Date of Electronic Publication: 2025 Dec 09.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101759493 Publication Model: Electronic Cited Medium: Internet ISSN: 2331-8422 (Electronic) Linking ISSN: 23318422 NLM ISO Abbreviation: ArXiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: ImmunoNX: a robust bioinformatics workflow to support personalized neoantigen vaccine trials.
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Jaime Leandro Foundation for Therapeutic Cancer Vaccines, Chapel Hill, NC, USA.<br /><searchLink fieldCode="AU" term="%22Karchin+R%22">Karchin R</searchLink>; Johns Hopkins Department of Biomedical Engineering, Baltimore, MD, United States.<br /><searchLink fieldCode="AU" term="%22Johanns+TM%22">Johanns TM</searchLink>; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.<br /><searchLink fieldCode="AU" term="%22Dunn+GP%22">Dunn GP</searchLink>; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.; Department of Surgery, Washington University School of Medicine, Saint Louis, MO, USA.; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA.; 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