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Title: IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank.
Authors: Zalevsky AO; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA. Electronic address: arthur.zalevsky@rcsb.org., Vallat B; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA. Electronic address: brinda.vallat@rcsb.org., Webb BM; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA., Tangmunarunkit H; Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA., Sekharan MR; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Shafaeibejestan A; Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA., Ganesan S; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA., Sagendorf J; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA., Jeffries CM; European Molecular Biology Laboratory, Hamburg Unit, c/o Deutsches Elektronen-Synchrotron, Notkestraße 85, 22607 Hamburg, Germany; Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Be'er Sheva 8410501, Israel., Trewhella J; School of Life and Environmental Sciences, University of Sydney, NSW 2006, Australia; Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA., Graziadei A; Human Technopole, Via Rita Levi Montalcini 1, 20157 Milano, Italy., Vizcaíno JA; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust, Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Leitner A; Institute of Molecular Systems Biology, Department of Biology, ETH Zürich, 8093 Zurich, Switzerland., Rappsilber J; Technische Universität Berlin, Chair of Bioanalytics, 10623 Berlin, Germany; Si-M/''Der Simulierte Mensch'', a Science Framework of Technische Universität Berlin and Charité - Universitätsmedizin Berlin, Berlin, Germany., Peisach E; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Flatt JW; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Young JY; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Majila K; National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka 560065, India., Viswanath S; National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka 560065, India., Kesselman C; Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA., Hoch JC; Biological Magnetic Resonance Data Bank, Department of Molecular Biology and Biophysics, University of Connecticut, Farmington, CT 06030-3305, USA., Kurisu G; Protein Data Bank Japan, Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan., Morris KL; Electron Microscopy Data Bank, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Velankar S; Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Berman HM; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA., Burley SK; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, La Jolla, CA 92093, USA; Rutgers Artificial Intelligence and Data Science (RAD) Collaboratory, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Sali A; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA. Electronic address: sali@salilab.org.
Source: Journal of molecular biology [J Mol Biol] 2026 Sep 15; Vol. 438 (18), pp. 169598. Date of Electronic Publication: 2025 Dec 18.
Publication Type: Journal Article
Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE
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  Data: IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank.
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  Data: <searchLink fieldCode="AU" term="%22Zalevsky+AO%22">Zalevsky AO</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA. Electronic address: arthur.zalevsky@rcsb.org.<br /><searchLink fieldCode="AU" term="%22Vallat+B%22">Vallat B</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA. Electronic address: brinda.vallat@rcsb.org.<br /><searchLink fieldCode="AU" term="%22Webb+BM%22">Webb BM</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA.<br /><searchLink fieldCode="AU" term="%22Tangmunarunkit+H%22">Tangmunarunkit H</searchLink>; Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Sekharan+MR%22">Sekharan MR</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.<br /><searchLink fieldCode="AU" term="%22Shafaeibejestan+A%22">Shafaeibejestan A</searchLink>; Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ganesan+S%22">Ganesan S</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA.<br /><searchLink fieldCode="AU" term="%22Sagendorf+J%22">Sagendorf J</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA.<br /><searchLink fieldCode="AU" term="%22Jeffries+CM%22">Jeffries CM</searchLink>; European Molecular Biology Laboratory, Hamburg Unit, c/o Deutsches Elektronen-Synchrotron, Notkestraße 85, 22607 Hamburg, Germany; Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Be'er Sheva 8410501, Israel.<br /><searchLink fieldCode="AU" term="%22Trewhella+J%22">Trewhella J</searchLink>; School of Life and Environmental Sciences, University of Sydney, NSW 2006, Australia; Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA.<br /><searchLink fieldCode="AU" term="%22Graziadei+A%22">Graziadei A</searchLink>; Human Technopole, Via Rita Levi Montalcini 1, 20157 Milano, Italy.<br /><searchLink fieldCode="AU" term="%22Vizcaíno+JA%22">Vizcaíno JA</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust, Genome Campus, Hinxton, Cambridge CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Leitner+A%22">Leitner A</searchLink>; Institute of Molecular Systems Biology, Department of Biology, ETH Zürich, 8093 Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Rappsilber+J%22">Rappsilber J</searchLink>; Technische Universität Berlin, Chair of Bioanalytics, 10623 Berlin, Germany; Si-M/''Der Simulierte Mensch'', a Science Framework of Technische Universität Berlin and Charité - Universitätsmedizin Berlin, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Peisach+E%22">Peisach E</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.<br /><searchLink fieldCode="AU" term="%22Flatt+JW%22">Flatt JW</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.<br /><searchLink fieldCode="AU" term="%22Young+JY%22">Young JY</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.<br /><searchLink fieldCode="AU" term="%22Majila+K%22">Majila K</searchLink>; National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka 560065, India.<br /><searchLink fieldCode="AU" term="%22Viswanath+S%22">Viswanath S</searchLink>; National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka 560065, India.<br /><searchLink fieldCode="AU" term="%22Kesselman+C%22">Kesselman C</searchLink>; Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Hoch+JC%22">Hoch JC</searchLink>; Biological Magnetic Resonance Data Bank, Department of Molecular Biology and Biophysics, University of Connecticut, Farmington, CT 06030-3305, USA.<br /><searchLink fieldCode="AU" term="%22Kurisu+G%22">Kurisu G</searchLink>; Protein Data Bank Japan, Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan.<br /><searchLink fieldCode="AU" term="%22Morris+KL%22">Morris KL</searchLink>; Electron Microscopy Data Bank, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Velankar+S%22">Velankar S</searchLink>; Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Berman+HM%22">Berman HM</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA.<br /><searchLink fieldCode="AU" term="%22Burley+SK%22">Burley SK</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, La Jolla, CA 92093, USA; Rutgers Artificial Intelligence and Data Science (RAD) Collaboratory, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.<br /><searchLink fieldCode="AU" term="%22Sali+A%22">Sali A</searchLink>; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA. Electronic address: sali@salilab.org.
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