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Protein foundation models: a comprehensive survey.

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Title: Protein foundation models: a comprehensive survey.
Authors: Xu H; Bioinformatics Center of AMMS, Beijing, 100850, China., Li L; Bioinformatics Center of AMMS, Beijing, 100850, China., Pan S; Bioinformatics Center of AMMS, Beijing, 100850, China., Cheng P; Bioinformatics Center of AMMS, Beijing, 100850, China., Wang Y; Bioinformatics Center of AMMS, Beijing, 100850, China., Rong Z; Bioinformatics Center of AMMS, Beijing, 100850, China., Liu F; College of Artificial Intelligence Medicine, Chongqing Medical University, Chongqing, 400016, China. fengliu@cqmu.edu.cn., Huang X; The Key Laboratory of Pancreatic Diseases of Zhejiang Province, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310003, China. huangxx@shanghaitech.edu.cn.; School of Life Science and Technology, Shanghai Tech University, Shanghai, 201210, China. huangxx@shanghaitech.edu.cn., Wang S; Bioinformatics Center of AMMS, Beijing, 100850, China. sqwang@bmi.ac.cn., Shu W; Bioinformatics Center of AMMS, Beijing, 100850, China. shuwj@bmi.ac.cn.
Source: Science China. Life sciences [Sci China Life Sci] 2026 May; Vol. 69 (5), pp. 1503-1531. Date of Electronic Publication: 2026 Jan 05.
Publication Type: Journal Article; Review
Journal Info: Publisher: Science China Press, co-published with Springer Country of Publication: China NLM ID: 101529880 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1869-1889 (Electronic) Linking ISSN: 16747305 NLM ISO Abbreviation: Sci China Life Sci Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Protein foundation models: a comprehensive survey.
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  Data: <searchLink fieldCode="AU" term="%22Xu+H%22">Xu H</searchLink>; Bioinformatics Center of AMMS, Beijing, 100850, China.<br /><searchLink fieldCode="AU" term="%22Li+L%22">Li L</searchLink>; Bioinformatics Center of AMMS, Beijing, 100850, China.<br /><searchLink fieldCode="AU" term="%22Pan+S%22">Pan S</searchLink>; Bioinformatics Center of AMMS, Beijing, 100850, China.<br /><searchLink fieldCode="AU" term="%22Cheng+P%22">Cheng P</searchLink>; Bioinformatics Center of AMMS, Beijing, 100850, China.<br /><searchLink fieldCode="AU" term="%22Wang+Y%22">Wang Y</searchLink>; Bioinformatics Center of AMMS, Beijing, 100850, China.<br /><searchLink fieldCode="AU" term="%22Rong+Z%22">Rong Z</searchLink>; Bioinformatics Center of AMMS, Beijing, 100850, China.<br /><searchLink fieldCode="AU" term="%22Liu+F%22">Liu F</searchLink>; College of Artificial Intelligence Medicine, Chongqing Medical University, Chongqing, 400016, China. fengliu@cqmu.edu.cn.<br /><searchLink fieldCode="AU" term="%22Huang+X%22">Huang X</searchLink>; The Key Laboratory of Pancreatic Diseases of Zhejiang Province, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310003, China. huangxx@shanghaitech.edu.cn.; School of Life Science and Technology, Shanghai Tech University, Shanghai, 201210, China. huangxx@shanghaitech.edu.cn.<br /><searchLink fieldCode="AU" term="%22Wang+S%22">Wang S</searchLink>; Bioinformatics Center of AMMS, Beijing, 100850, China. sqwang@bmi.ac.cn.<br /><searchLink fieldCode="AU" term="%22Shu+W%22">Shu W</searchLink>; Bioinformatics Center of AMMS, Beijing, 100850, China. shuwj@bmi.ac.cn.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Science+China+Press%2C+co-published+with+Springer%22">Science China Press, co-published with Springer </searchLink><i>Country of Publication: </i>China <i>NLM ID: </i>101529880 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1869-1889 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2216747305%22">16747305 </searchLink><i>NLM ISO Abbreviation: </i>Sci China Life Sci <i>Subsets: </i>MEDLINE
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        Value: 10.1007/s11427-025-3147-2
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              Text: 2026 May
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