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Variant-resolved prediction of context-specific isoform variation with a graph-based attention model.

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Title: Variant-resolved prediction of context-specific isoform variation with a graph-based attention model.
Authors: Litman A; Quantitative and Computational Biology Program, Princeton University, Princeton, NJ 08540, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA., Pan Z; Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA., Sokolova K; Princeton Precision Health, Princeton, NJ 08540, USA., Fang J; Quantitative and Computational Biology Program, Princeton University, Princeton, NJ 08540, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA., Marvin T; Quantitative and Computational Biology Program, Princeton University, Princeton, NJ 08540, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA., Sauerwald N; Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA., Park CY; Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA., Theesfeld CL; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA; Princeton Precision Health, Princeton, NJ 08540, USA., Troyanskaya OG; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA; Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA; Princeton Precision Health, Princeton, NJ 08540, USA; Department of Computer Science, Princeton University, Princeton, NJ 08540, USA. Electronic address: ogt@princeton.edu.
Source: Cell genomics [Cell Genom] 2026 Apr 08; Vol. 6 (4), pp. 101126. Date of Electronic Publication: 2026 Jan 16.
Publication Type: Journal Article
Journal Info: Publisher: Elsevier, Inc Country of Publication: United States NLM ID: 9918284260106676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-979X (Electronic) Linking ISSN: 2666979X NLM ISO Abbreviation: Cell Genom Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Variant-resolved prediction of context-specific isoform variation with a graph-based attention model.
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  Data: <searchLink fieldCode="AU" term="%22Litman+A%22">Litman A</searchLink>; Quantitative and Computational Biology Program, Princeton University, Princeton, NJ 08540, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA.<br /><searchLink fieldCode="AU" term="%22Pan+Z%22">Pan Z</searchLink>; Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA.<br /><searchLink fieldCode="AU" term="%22Sokolova+K%22">Sokolova K</searchLink>; Princeton Precision Health, Princeton, NJ 08540, USA.<br /><searchLink fieldCode="AU" term="%22Fang+J%22">Fang J</searchLink>; Quantitative and Computational Biology Program, Princeton University, Princeton, NJ 08540, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA.<br /><searchLink fieldCode="AU" term="%22Marvin+T%22">Marvin T</searchLink>; Quantitative and Computational Biology Program, Princeton University, Princeton, NJ 08540, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA.<br /><searchLink fieldCode="AU" term="%22Sauerwald+N%22">Sauerwald N</searchLink>; Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA.<br /><searchLink fieldCode="AU" term="%22Park+CY%22">Park CY</searchLink>; Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA.<br /><searchLink fieldCode="AU" term="%22Theesfeld+CL%22">Theesfeld CL</searchLink>; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA; Princeton Precision Health, Princeton, NJ 08540, USA.<br /><searchLink fieldCode="AU" term="%22Troyanskaya+OG%22">Troyanskaya OG</searchLink>; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA; Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA; Princeton Precision Health, Princeton, NJ 08540, USA; Department of Computer Science, Princeton University, Princeton, NJ 08540, USA. Electronic address: ogt@princeton.edu.
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  Data: <searchLink fieldCode="JN" term="%229918284260106676%22">Cell genomics</searchLink> [Cell Genom] 2026 Apr 08; Vol. 6 (4), pp. 101126. <i>Date of Electronic Publication: </i>2026 Jan 16.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Elsevier%2C+Inc%22">Elsevier, Inc </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>9918284260106676 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2666-979X (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%222666979X%22">2666979X </searchLink><i>NLM ISO Abbreviation: </i>Cell Genom <i>Subsets: </i>MEDLINE
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        Value: 10.1016/j.xgen.2025.101126
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        Text: English
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              Text: 2026 Apr 08
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