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Reduced methane emissions in transgenic rice genotypes are associated with altered rhizosphere microbial hydrogen cycling.

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Title: Reduced methane emissions in transgenic rice genotypes are associated with altered rhizosphere microbial hydrogen cycling.
Authors: Shi LD; Innovative Genomics Institute, University of California, Berkeley, CA, USA., Ercoli MF; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA., Kim J; Environmental Science, Policy and Management, University of California, Berkeley, CA, USA., de Araujo Junior AT; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA., Estera-Molina K; Innovative Genomics Institute, University of California, Berkeley, CA, USA.; Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA., Soni S; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA., Weitz TS; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA., Shigenaga AM; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA., Dukovski I; Bioinformatics Program, Faculty of Computing and Data Sciences, Boston University, Boston, MA, USA.; Biological Design Center, Boston University, Boston, MA, USA.; Center for Advanced Interdisciplinary Research, Ss. Cyril and Methodius University, Skopje, North Macedonia., Sachdeva R; Innovative Genomics Institute, University of California, Berkeley, CA, USA., Turumtay H; Feedstocks Division, Joint BioEnergy Institute, Emeryville, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Energy System Engineering, Karadeniz Technical University, Trabzon, Turkey., Louie KB; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Bowen BP; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Kosina SM; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Scheller HV; Feedstocks Division, Joint BioEnergy Institute, Emeryville, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, USA., Pett-Ridge J; Innovative Genomics Institute, University of California, Berkeley, CA, USA.; Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA.; Life and Environmental Sciences Department, University of California Merced, Merced, CA, USA., Segrè D; Bioinformatics Program, Faculty of Computing and Data Sciences, Boston University, Boston, MA, USA.; Biological Design Center, Boston University, Boston, MA, USA.; Department of Physics, Boston University, Boston, MA, USA.; Department of Biomedical Engineering, Boston University, Boston, MA, USA.; Department of Biology, Boston University, Boston, MA, USA., Northen TR; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Ronald PC; Innovative Genomics Institute, University of California, Berkeley, CA, USA. pcronald@ucdavis.edu.; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA. pcronald@ucdavis.edu.; Feedstocks Division, Joint BioEnergy Institute, Emeryville, CA, USA. pcronald@ucdavis.edu., Banfield JF; Innovative Genomics Institute, University of California, Berkeley, CA, USA. jbanfield@berkeley.edu.; Environmental Science, Policy and Management, University of California, Berkeley, CA, USA. jbanfield@berkeley.edu.; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, USA. jbanfield@berkeley.edu.; Earth and Planetary Science, University of California, Berkeley, CA, USA. jbanfield@berkeley.edu.
Source: Nature communications [Nat Commun] 2026 Jan 26; Vol. 17 (1). Date of Electronic Publication: 2026 Jan 26.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Reduced methane emissions in transgenic rice genotypes are associated with altered rhizosphere microbial hydrogen cycling.
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  Data: <searchLink fieldCode="AU" term="%22Shi+LD%22">Shi LD</searchLink>; Innovative Genomics Institute, University of California, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ercoli+MF%22">Ercoli MF</searchLink>; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA.<br /><searchLink fieldCode="AU" term="%22Kim+J%22">Kim J</searchLink>; Environmental Science, Policy and Management, University of California, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22de+Araujo+Junior+AT%22">de Araujo Junior AT</searchLink>; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA.<br /><searchLink fieldCode="AU" term="%22Estera-Molina+K%22">Estera-Molina K</searchLink>; Innovative Genomics Institute, University of California, Berkeley, CA, USA.; Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA.<br /><searchLink fieldCode="AU" term="%22Soni+S%22">Soni S</searchLink>; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA.<br /><searchLink fieldCode="AU" term="%22Weitz+TS%22">Weitz TS</searchLink>; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA.<br /><searchLink fieldCode="AU" term="%22Shigenaga+AM%22">Shigenaga AM</searchLink>; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA.<br /><searchLink fieldCode="AU" term="%22Dukovski+I%22">Dukovski I</searchLink>; Bioinformatics Program, Faculty of Computing and Data Sciences, Boston University, Boston, MA, USA.; Biological Design Center, Boston University, Boston, MA, USA.; Center for Advanced Interdisciplinary Research, Ss. Cyril and Methodius University, Skopje, North Macedonia.<br /><searchLink fieldCode="AU" term="%22Sachdeva+R%22">Sachdeva R</searchLink>; Innovative Genomics Institute, University of California, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Turumtay+H%22">Turumtay H</searchLink>; Feedstocks Division, Joint BioEnergy Institute, Emeryville, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Energy System Engineering, Karadeniz Technical University, Trabzon, Turkey.<br /><searchLink fieldCode="AU" term="%22Louie+KB%22">Louie KB</searchLink>; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Bowen+BP%22">Bowen BP</searchLink>; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Kosina+SM%22">Kosina SM</searchLink>; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Scheller+HV%22">Scheller HV</searchLink>; Feedstocks Division, Joint BioEnergy Institute, Emeryville, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Pett-Ridge+J%22">Pett-Ridge J</searchLink>; Innovative Genomics Institute, University of California, Berkeley, CA, USA.; Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA.; Life and Environmental Sciences Department, University of California Merced, Merced, CA, USA.<br /><searchLink fieldCode="AU" term="%22Segrè+D%22">Segrè D</searchLink>; Bioinformatics Program, Faculty of Computing and Data Sciences, Boston University, Boston, MA, USA.; Biological Design Center, Boston University, Boston, MA, USA.; Department of Physics, Boston University, Boston, MA, USA.; Department of Biomedical Engineering, Boston University, Boston, MA, USA.; Department of Biology, Boston University, Boston, MA, USA.<br /><searchLink fieldCode="AU" term="%22Northen+TR%22">Northen TR</searchLink>; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ronald+PC%22">Ronald PC</searchLink>; Innovative Genomics Institute, University of California, Berkeley, CA, USA. pcronald@ucdavis.edu.; Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA. pcronald@ucdavis.edu.; Feedstocks Division, Joint BioEnergy Institute, Emeryville, CA, USA. pcronald@ucdavis.edu.<br /><searchLink fieldCode="AU" term="%22Banfield+JF%22">Banfield JF</searchLink>; Innovative Genomics Institute, University of California, Berkeley, CA, USA. jbanfield@berkeley.edu.; Environmental Science, Policy and Management, University of California, Berkeley, CA, USA. jbanfield@berkeley.edu.; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, USA. jbanfield@berkeley.edu.; Earth and Planetary Science, University of California, Berkeley, CA, USA. jbanfield@berkeley.edu.
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