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HCR-Proxy resolves site-specific proximal RNA microenvironments at subcompartmental resolution.

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Title: HCR-Proxy resolves site-specific proximal RNA microenvironments at subcompartmental resolution.
Authors: Trupej A; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; PhD Program 'Biosciences', Biotechnical Faculty, University of Ljubljana, Ljubljana, SIovenia., Bergant V; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Virology, School of Medicine and Health, Technical University Munich, Munich, Germany., Novljan J; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; Department of Genomics and Developmental Biology, Zoological Institute, Karlsruhe Institute of Technology, Germany., Dodel M; Department of Biochemistry, University of Oxford, United Kingdom., Klobučar T; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; PhD Program 'Biosciences', Biotechnical Faculty, University of Ljubljana, Ljubljana, SIovenia., Adamek M; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; PhD Program 'Biosciences', Biotechnical Faculty, University of Ljubljana, Ljubljana, SIovenia., Lee FCY; Centre for Developmental Neurobiology, King's College London, London, United Kingdom., Yap K; Centre for Developmental Neurobiology, King's College London, London, United Kingdom., Makeyev E; Centre for Developmental Neurobiology, King's College London, London, United Kingdom., Kokot B; Jozef Stefan Institute, Ljubljana, SIovenia., Čehovin Zajc L; Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, SIovenia., Pichlmair A; Institute of Virology, School of Medicine and Health, Technical University Munich, Munich, Germany.; Institute of Virology, Helmholtz Center Munich, Munich, Germany.; German Centre for Infection Research (DZIF), Partner site Munich, Germany., Urbančič I; Jozef Stefan Institute, Ljubljana, SIovenia., Mardakheh FK; Department of Biochemistry, University of Oxford, United Kingdom., Modic M; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; Department of Genomics and Developmental Biology, Zoological Institute, Karlsruhe Institute of Technology, Germany.; Department of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, United Kingdom.
Source: Nucleic acids research [Nucleic Acids Res] 2026 Feb 05; Vol. 54 (4).
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: HCR-Proxy resolves site-specific proximal RNA microenvironments at subcompartmental resolution.
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  Data: <searchLink fieldCode="AU" term="%22Trupej+A%22">Trupej A</searchLink>; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; PhD Program 'Biosciences', Biotechnical Faculty, University of Ljubljana, Ljubljana, SIovenia.<br /><searchLink fieldCode="AU" term="%22Bergant+V%22">Bergant V</searchLink>; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Virology, School of Medicine and Health, Technical University Munich, Munich, Germany.<br /><searchLink fieldCode="AU" term="%22Novljan+J%22">Novljan J</searchLink>; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; Department of Genomics and Developmental Biology, Zoological Institute, Karlsruhe Institute of Technology, Germany.<br /><searchLink fieldCode="AU" term="%22Dodel+M%22">Dodel M</searchLink>; Department of Biochemistry, University of Oxford, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Klobučar+T%22">Klobučar T</searchLink>; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; PhD Program 'Biosciences', Biotechnical Faculty, University of Ljubljana, Ljubljana, SIovenia.<br /><searchLink fieldCode="AU" term="%22Adamek+M%22">Adamek M</searchLink>; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; PhD Program 'Biosciences', Biotechnical Faculty, University of Ljubljana, Ljubljana, SIovenia.<br /><searchLink fieldCode="AU" term="%22Lee+FCY%22">Lee FCY</searchLink>; Centre for Developmental Neurobiology, King's College London, London, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Yap+K%22">Yap K</searchLink>; Centre for Developmental Neurobiology, King's College London, London, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Makeyev+E%22">Makeyev E</searchLink>; Centre for Developmental Neurobiology, King's College London, London, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Kokot+B%22">Kokot B</searchLink>; Jozef Stefan Institute, Ljubljana, SIovenia.<br /><searchLink fieldCode="AU" term="%22Čehovin+Zajc+L%22">Čehovin Zajc L</searchLink>; Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, SIovenia.<br /><searchLink fieldCode="AU" term="%22Pichlmair+A%22">Pichlmair A</searchLink>; Institute of Virology, School of Medicine and Health, Technical University Munich, Munich, Germany.; Institute of Virology, Helmholtz Center Munich, Munich, Germany.; German Centre for Infection Research (DZIF), Partner site Munich, Germany.<br /><searchLink fieldCode="AU" term="%22Urbančič+I%22">Urbančič I</searchLink>; Jozef Stefan Institute, Ljubljana, SIovenia.<br /><searchLink fieldCode="AU" term="%22Mardakheh+FK%22">Mardakheh FK</searchLink>; Department of Biochemistry, University of Oxford, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Modic+M%22">Modic M</searchLink>; National Institute of Chemistry, Ljubljana, SIovenia.; Institute of Biological and Chemical Systems, Karlsruhe Institute of Technology, Germany.; Center for Synthetic Genomics (SynGen) Heidelberg-Karlsruhe-Mainz, Germany.; Department of Genomics and Developmental Biology, Zoological Institute, Karlsruhe Institute of Technology, Germany.; Department of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, United Kingdom.
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        Value: 10.1093/nar/gkag086
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