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Metagenomic surveillance reveals off-season circulation of respiratory viruses during the COVID-19 pandemic in Salvador, Brazil.

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Title: Metagenomic surveillance reveals off-season circulation of respiratory viruses during the COVID-19 pandemic in Salvador, Brazil.
Authors: Aguilar Ticona JP; Instituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, BA, Brazil.; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.; Programa de Pós-Graduação em Microbiologia, Universidade Federal da Bahia, Salvador, BA, Brazil., Amorim Santos L; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil., Meng X; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.; Department of Laboratory Medicine, Peking Union Medical College Hospital, Beijing, China., Nery N Jr; Instituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, BA, Brazil.; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States., Fofana MO; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.; Department of Emergency Medicine, Emory University School of Medicine, Atlanta, GA, United States., de Moraes L; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil., Morais Strobel I; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil., Vitoriano R; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil., Silveira Cucco M; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil., Andrade Belitardo EMM; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Instituto de Ciências da Saúde, Universidade Federal da Bahia, Salvador, BA, Brazil., Thakku G; Chan Zuckerberg Biohub, San Francisco, California, United States., Cruz JS; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil., Detweiler AM; Chan Zuckerberg Biohub, San Francisco, California, United States., Neff N; Chan Zuckerberg Biohub, San Francisco, California, United States., Tato CM; Chan Zuckerberg Biohub, San Francisco, California, United States., Reis MG; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.; Faculdade de Medicina da Bahia, Universidade Federal da Bahia, Salvador, BA, Brazil., Costa F; Instituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, BA, Brazil.; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States., Cummings DAT; Department of Biology, University of Florida, Gainesville, FL, United States.; Emerging Pathogens Institute, University of Florida, Gainesville, FL, United States.; Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States.; Department of Biomedical Engineering, Johns Hopkins Whiting School of Engineering, Baltimore, MD, United States., Ko AI; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States., Khouri R; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Chan Zuckerberg Biohub, San Francisco, California, United States.; Rega Institute for Medical Research, Katholieke Universiteit Leuven, Leuven, Belgium.
Source: New microbes and new infections [New Microbes New Infect] 2026 Feb 06; Vol. 70, pp. 101717. Date of Electronic Publication: 2026 Feb 06 (Print Publication: 2026).
Publication Type: Journal Article
Journal Info: Publisher: Elsevier Country of Publication: England NLM ID: 101624750 Publication Model: eCollection Cited Medium: Print ISSN: 2052-2975 (Print) Linking ISSN: 20522975 NLM ISO Abbreviation: New Microbes New Infect Subsets: PubMed not MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Aguilar+Ticona+JP%22">Aguilar Ticona JP</searchLink>; Instituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, BA, Brazil.; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.; Programa de Pós-Graduação em Microbiologia, Universidade Federal da Bahia, Salvador, BA, Brazil.<br /><searchLink fieldCode="AU" term="%22Amorim+Santos+L%22">Amorim Santos L</searchLink>; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.<br /><searchLink fieldCode="AU" term="%22Meng+X%22">Meng X</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.; Department of Laboratory Medicine, Peking Union Medical College Hospital, Beijing, China.<br /><searchLink fieldCode="AU" term="%22Nery+N+Jr%22">Nery N Jr</searchLink>; Instituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, BA, Brazil.; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.<br /><searchLink fieldCode="AU" term="%22Fofana+MO%22">Fofana MO</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.; Department of Emergency Medicine, Emory University School of Medicine, Atlanta, GA, United States.<br /><searchLink fieldCode="AU" term="%22de+Moraes+L%22">de Moraes L</searchLink>; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.<br /><searchLink fieldCode="AU" term="%22Morais+Strobel+I%22">Morais Strobel I</searchLink>; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.<br /><searchLink fieldCode="AU" term="%22Vitoriano+R%22">Vitoriano R</searchLink>; 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Chan Zuckerberg Biohub, San Francisco, California, United States.<br /><searchLink fieldCode="AU" term="%22Tato+CM%22">Tato CM</searchLink>; Chan Zuckerberg Biohub, San Francisco, California, United States.<br /><searchLink fieldCode="AU" term="%22Reis+MG%22">Reis MG</searchLink>; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.; Faculdade de Medicina da Bahia, Universidade Federal da Bahia, Salvador, BA, Brazil.<br /><searchLink fieldCode="AU" term="%22Costa+F%22">Costa F</searchLink>; Instituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, BA, Brazil.; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.<br /><searchLink fieldCode="AU" term="%22Cummings+DAT%22">Cummings DAT</searchLink>; Department of Biology, University of Florida, Gainesville, FL, United States.; Emerging Pathogens Institute, University of Florida, Gainesville, FL, United States.; Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States.; Department of Biomedical Engineering, Johns Hopkins Whiting School of Engineering, Baltimore, MD, United States.<br /><searchLink fieldCode="AU" term="%22Ko+AI%22">Ko AI</searchLink>; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States.<br /><searchLink fieldCode="AU" term="%22Khouri+R%22">Khouri R</searchLink>; Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, BA, Brazil.; Chan Zuckerberg Biohub, San Francisco, California, United States.; Rega Institute for Medical Research, Katholieke Universiteit Leuven, Leuven, Belgium.
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