Characterisation of Bordetella pertussis virulence and macrolide resistance in Australia by targeted culture-independent sequencing: a genomic epidemiology study.
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| Title: | Characterisation of Bordetella pertussis virulence and macrolide resistance in Australia by targeted culture-independent sequencing: a genomic epidemiology study. |
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| Authors: | Fong W; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia. Electronic address: winkie.fong@health.nsw.gov.au., Rockett RJ; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia., Tam KK; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia., Nguyen T; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia., Sim EM; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia., Tay E; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia., Suster CJE; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia., Agius JE; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia., Chandra S; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia., Watt AE; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia., Speers D; Department of Microbiology, PathWest Laboratory Medicine Western Australia, Queen Elizabeth II Medical Centre, Nedlands, WA, Australia., Graham M; Victorian Infectious Diseases Reference Laboratory, The Royal Melbourne Hospital, The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia; Department of Infectious Diseases, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia., Tran T; Victorian Infectious Diseases Reference Laboratory, The Royal Melbourne Hospital, The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia; Department of Infectious Diseases, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia., Lim CK; Victorian Infectious Diseases Reference Laboratory, The Royal Melbourne Hospital, The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia; Department of Infectious Diseases, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia., Wehrhahn MC; Douglass Hanly Moir Pathology, A Sonic Healthcare Practice, Macquarie Park, NSW, Australia., Ginn AN; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; Douglass Hanly Moir Pathology, A Sonic Healthcare Practice, Macquarie Park, NSW, Australia., Gray D; Douglass Hanly Moir Pathology, A Sonic Healthcare Practice, Macquarie Park, NSW, Australia., Robson J; Sullivan Nicolaides Pathology, A Sonic Healthcare Practice, Bowen Hills, QLD, Australia., Gardner I; Sullivan Nicolaides Pathology, A Sonic Healthcare Practice, Bowen Hills, QLD, Australia., McDougall R; Sullivan Nicolaides Pathology, A Sonic Healthcare Practice, Bowen Hills, QLD, Australia., Papanicolas L; SA Pathology, Adelaide, SA, Australia., Howard-Jones AR; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; Department of Microbiology and Infectious Diseases, The Children's Hospital at Westmead, Westmead, NSW, Australia., Outhred AC; Department of Microbiology and Infectious Diseases, The Children's Hospital at Westmead, Westmead, NSW, Australia., Kennedy K; Department of Clinical Microbiology and Infectious Diseases, Canberra Health Services, Australian National University Medical School of Medicine and Psychology, Canberra, ACT, Australia., Cooley L; Department of Microbiology and Infectious Diseases, Royal Hobart Hospital, Hobart, TAS, Australia., Wang Q; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia., Jeoffreys N; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia., Chen SC; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia., Basile K; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia., Golubchik T; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia., Kok J; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia., Sintchenko V; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia. |
| Source: | The Lancet. Microbe [Lancet Microbe] 2026 Mar; Vol. 7 (3), pp. 101286. Date of Electronic Publication: 2026 Feb 25. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101769019 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-5247 (Electronic) Linking ISSN: 26665247 NLM ISO Abbreviation: Lancet Microbe Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
| FullText | Text: Availability: 0 |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 41763238 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: Characterisation of Bordetella pertussis virulence and macrolide resistance in Australia by targeted culture-independent sequencing: a genomic epidemiology study. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Fong+W%22">Fong W</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia. Electronic address: winkie.fong@health.nsw.gov.au.<br /><searchLink fieldCode="AU" term="%22Rockett+RJ%22">Rockett RJ</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Tam+KK%22">Tam KK</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Nguyen+T%22">Nguyen T</searchLink>; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Sim+EM%22">Sim EM</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Tay+E%22">Tay E</searchLink>; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Suster+CJE%22">Suster CJE</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Agius+JE%22">Agius JE</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Chandra+S%22">Chandra S</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Watt+AE%22">Watt AE</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Speers+D%22">Speers D</searchLink>; Department of Microbiology, PathWest Laboratory Medicine Western Australia, Queen Elizabeth II Medical Centre, Nedlands, WA, Australia.<br /><searchLink fieldCode="AU" term="%22Graham+M%22">Graham M</searchLink>; Victorian Infectious Diseases Reference Laboratory, The Royal Melbourne Hospital, The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia; Department of Infectious Diseases, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Tran+T%22">Tran T</searchLink>; Victorian Infectious Diseases Reference Laboratory, The Royal Melbourne Hospital, The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia; Department of Infectious Diseases, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Lim+CK%22">Lim CK</searchLink>; Victorian Infectious Diseases Reference Laboratory, The Royal Melbourne Hospital, The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia; Department of Infectious Diseases, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Wehrhahn+MC%22">Wehrhahn MC</searchLink>; Douglass Hanly Moir Pathology, A Sonic Healthcare Practice, Macquarie Park, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Ginn+AN%22">Ginn AN</searchLink>; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; Douglass Hanly Moir Pathology, A Sonic Healthcare Practice, Macquarie Park, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Gray+D%22">Gray D</searchLink>; Douglass Hanly Moir Pathology, A Sonic Healthcare Practice, Macquarie Park, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Robson+J%22">Robson J</searchLink>; Sullivan Nicolaides Pathology, A Sonic Healthcare Practice, Bowen Hills, QLD, Australia.<br /><searchLink fieldCode="AU" term="%22Gardner+I%22">Gardner I</searchLink>; Sullivan Nicolaides Pathology, A Sonic Healthcare Practice, Bowen Hills, QLD, Australia.<br /><searchLink fieldCode="AU" term="%22McDougall+R%22">McDougall R</searchLink>; Sullivan Nicolaides Pathology, A Sonic Healthcare Practice, Bowen Hills, QLD, Australia.<br /><searchLink fieldCode="AU" term="%22Papanicolas+L%22">Papanicolas L</searchLink>; SA Pathology, Adelaide, SA, Australia.<br /><searchLink fieldCode="AU" term="%22Howard-Jones+AR%22">Howard-Jones AR</searchLink>; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; Department of Microbiology and Infectious Diseases, The Children's Hospital at Westmead, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Outhred+AC%22">Outhred AC</searchLink>; Department of Microbiology and Infectious Diseases, The Children's Hospital at Westmead, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Kennedy+K%22">Kennedy K</searchLink>; Department of Clinical Microbiology and Infectious Diseases, Canberra Health Services, Australian National University Medical School of Medicine and Psychology, Canberra, ACT, Australia.<br /><searchLink fieldCode="AU" term="%22Cooley+L%22">Cooley L</searchLink>; Department of Microbiology and Infectious Diseases, Royal Hobart Hospital, Hobart, TAS, Australia.<br /><searchLink fieldCode="AU" term="%22Wang+Q%22">Wang Q</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Jeoffreys+N%22">Jeoffreys N</searchLink>; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Chen+SC%22">Chen SC</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Basile+K%22">Basile K</searchLink>; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Golubchik+T%22">Golubchik T</searchLink>; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Kok+J%22">Kok J</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Sintchenko+V%22">Sintchenko V</searchLink>; Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, NSW, Australia; Sydney Infectious Diseases Institute, Faculty of Medicine & Health, The University of Sydney, Westmead, NSW, Australia; School of Medical Sciences, Faculty of Medicine & Health, The University of Sydney, Camperdown, NSW, Australia; Centre for Infectious Diseases and Microbiology Laboratory Services, Institute of Clinical Pathology and Medical Research, New South Wales Health Pathology, Westmead, NSW, Australia. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22101769019%22">The Lancet. Microbe</searchLink> [Lancet Microbe] 2026 Mar; Vol. 7 (3), pp. 101286. <i>Date of Electronic Publication: </i>2026 Feb 25. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Elsevier+Ltd%22">Elsevier Ltd </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>101769019 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2666-5247 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2226665247%22">26665247 </searchLink><i>NLM ISO Abbreviation: </i>Lancet Microbe <i>Subsets: </i>MEDLINE |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=41763238 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1016/j.lanmic.2025.101286 Languages: – Code: eng Text: English PhysicalDescription: Pagination: StartPage: 101286 Titles: – TitleFull: Characterisation of Bordetella pertussis virulence and macrolide resistance in Australia by targeted culture-independent sequencing: a genomic epidemiology study. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Fong W – PersonEntity: Name: NameFull: Rockett RJ – PersonEntity: Name: NameFull: Tam KK – PersonEntity: Name: NameFull: Nguyen T – PersonEntity: Name: NameFull: Sim EM – PersonEntity: Name: NameFull: Tay E – PersonEntity: Name: NameFull: Suster CJE – PersonEntity: Name: NameFull: Agius JE – PersonEntity: Name: NameFull: Chandra S – PersonEntity: Name: NameFull: Watt AE – PersonEntity: Name: NameFull: Speers D – PersonEntity: Name: NameFull: Graham M – PersonEntity: Name: NameFull: Tran T – PersonEntity: Name: NameFull: Lim CK – PersonEntity: Name: NameFull: Wehrhahn MC – PersonEntity: Name: NameFull: Ginn AN – PersonEntity: Name: NameFull: Gray D – PersonEntity: Name: NameFull: Robson J – PersonEntity: Name: NameFull: Gardner I – PersonEntity: Name: NameFull: McDougall R – PersonEntity: Name: NameFull: Papanicolas L – PersonEntity: Name: NameFull: Howard-Jones AR – PersonEntity: Name: NameFull: Outhred AC – PersonEntity: Name: NameFull: Kennedy K – PersonEntity: Name: NameFull: Cooley L – PersonEntity: Name: NameFull: Wang Q – PersonEntity: Name: NameFull: Jeoffreys N – PersonEntity: Name: NameFull: Chen SC – PersonEntity: Name: NameFull: Basile K – PersonEntity: Name: NameFull: Golubchik T – PersonEntity: Name: NameFull: Kok J – PersonEntity: Name: NameFull: Sintchenko V IsPartOfRelationships: – BibEntity: Dates: – D: 01 M: 03 Text: 2026 Mar Type: published Y: 2026 Identifiers: – Type: issn-electronic Value: 2666-5247 Numbering: – Type: volume Value: 7 – Type: issue Value: 3 Titles: – TitleFull: The Lancet. Microbe Type: main |
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