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Nasopharyngeal Microbiome Composition and its Clinical Correlates in Children Hospitalized with Severe Pneumonia in East Africa.

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Title: Nasopharyngeal Microbiome Composition and its Clinical Correlates in Children Hospitalized with Severe Pneumonia in East Africa.
Authors: Makori TO; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Laboratory of Medical Microbiology, Vaccine and Infectious Diseases Institute, University of Antwerp, Antwerp, Belgium., Gicheru ET; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Mburu MW; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Sada MS; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Nyawa O; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Mutunga M; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Lewa C; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Cheruiyot R; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya., Kiguli S; Department of Paediatrics, School of Medicine, Makerere University and Mulago Hospital, Kampala, Uganda., Olupot-Olupot P; Mbale Regional Referral Hospital, Mbale Clinical Research Institute, Mbale, Uganda., Muhindo R; Mbale Regional Referral Hospital, Mbale Clinical Research Institute, Mbale, Uganda., Mogaka C; Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, United Kingdom., Williams TN; Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya.; Department of Infectious Disease and Institute of Global Health and Innovation, Division of Medicine, Imperial College, London, United Kingdom., Agoti CN; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, United Kingdom.; Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya., Maitland K; Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya.; Department of Infectious Disease and Institute of Global Health and Innovation, Division of Medicine, Imperial College, London, United Kingdom., Sande CJ; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, United Kingdom.; Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya.
Source: The Journal of infectious diseases [J Infect Dis] 2026 Mar 03. Date of Electronic Publication: 2026 Mar 03.
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0413675 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1537-6613 (Electronic) Linking ISSN: 00221899 NLM ISO Abbreviation: J Infect Dis Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Makori+TO%22">Makori TO</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Laboratory of Medical Microbiology, Vaccine and Infectious Diseases Institute, University of Antwerp, Antwerp, Belgium.<br /><searchLink fieldCode="AU" term="%22Gicheru+ET%22">Gicheru ET</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Mburu+MW%22">Mburu MW</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Sada+MS%22">Sada MS</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Nyawa+O%22">Nyawa O</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Mutunga+M%22">Mutunga M</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Lewa+C%22">Lewa C</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Cheruiyot+R%22">Cheruiyot R</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Kiguli+S%22">Kiguli S</searchLink>; Department of Paediatrics, School of Medicine, Makerere University and Mulago Hospital, Kampala, Uganda.<br /><searchLink fieldCode="AU" term="%22Olupot-Olupot+P%22">Olupot-Olupot P</searchLink>; Mbale Regional Referral Hospital, Mbale Clinical Research Institute, Mbale, Uganda.<br /><searchLink fieldCode="AU" term="%22Muhindo+R%22">Muhindo R</searchLink>; Mbale Regional Referral Hospital, Mbale Clinical Research Institute, Mbale, Uganda.<br /><searchLink fieldCode="AU" term="%22Mogaka+C%22">Mogaka C</searchLink>; Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Williams+TN%22">Williams TN</searchLink>; Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya.; Department of Infectious Disease and Institute of Global Health and Innovation, Division of Medicine, Imperial College, London, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Agoti+CN%22">Agoti CN</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, United Kingdom.; Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Maitland+K%22">Maitland K</searchLink>; Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya.; Department of Infectious Disease and Institute of Global Health and Innovation, Division of Medicine, Imperial College, London, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Sande+CJ%22">Sande CJ</searchLink>; Bioscience Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, United Kingdom.; Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya.
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        Value: 10.1093/infdis/jiag093
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        Text: English
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