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Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture.

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Title: Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture.
Authors: Steindorff AS; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Cai FM; State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen University, Shenzhen, China. caif8@mail.sysu.edu.cn., Ding M; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Key lab of organic-based fertilizers of China, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, China., Jiang S; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Key lab of organic-based fertilizers of China, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, China., Atanasova L; Department of Biotechnology and Food Science, BOKU University, Vienna, Austria., Baker SE; Microbial Molecular Phenotyping Group, Environmental Molecular Sciences Division, Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Barbosa-Filho JR; Department of Biochemistry and Molecular Biology, Federal University of Goiás, Goiânia, Brazil., Bayram Akcapinar G; Department of Medical Biotechnology, Institute of Health Sciences, Acibadem University, Istanbul, Turkey., Brown DW; USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, Peoria, IL, USA., Chaverri P; Department of Natural Sciences, Bowie State University, Bowie, MD, USA., Chen P; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Key lab of organic-based fertilizers of China, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, China.; Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands., Chenthamara K; Department of Biochemical Technology, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria., Daum C; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Drula E; Aix Marseille Univ, CNRS, INRAE, AFMB, Marseille, France., Dubey M; Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden., Brandström Durling M; Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden., Flatschacher D; Department of Microbiology, University of Innsbruck, Innsbruck, Austria., Ebner T; KOLAIDO GmbH, Altenrhein, Switzerland., Emri T; Department of Molecular Biotechnology and Microbiology, Institute of Biotechnology, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary.; HUN-REN-UD Fungal Stress Biology Research Group, Debrecen, Hungary., Gao R; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Key lab of organic-based fertilizers of China, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, China.; Jiangsu Key Laboratory for Pathogens and Ecosystems, Jiangsu Engineering and Technology Research Centre for Microbiology, College of Life Sciences, Nanjing Normal University, Nanjing, China., Georg RC; Department of Biochemistry and Molecular Biology, Federal University of Goiás, Goiânia, Brazil., Henrissat B; Department of Biotechnology and Biomedicine (DTU Bioengineering), Technical University of Denmark, Lyngby, Denmark., Hermosa R; Institute for Agribiotechnology Research (CIALE), Department of Microbiology and Genetics, University of Salamanca, Salamanca, Spain., Herrera-Estrella A; Advanced Genomics Unit, Center for Research and Advanced Studies, Irapuato, Mexico., Hinterdobler W; MyPilz GmbH, Vienna, Austria., Kainz P; KOLAIDO GmbH, Altenrhein, Switzerland., Karlsson M; Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden., Kredics L; Department of Biotechnology and Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary., Kubicek CP; Department of Biochemical Technology, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria., Kuo A; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., LaButti K; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Lipzen A; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Lorito M; Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy., Mach RL; Department of Biochemical Technology, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria., Manganiello G; Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy., Marik T; Department of Biotechnology and Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary., Martinez-Reyes N; Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands.; University of Leon, Ponferrada, Spain., Mayrhofer-Reinhartshuber M; KML Vision GmbH, Graz, Austria., Miskei M; HUN-REN-UD Fungal Stress Biology Research Group, Debrecen, Hungary., Moisan MC; Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada., Mondo S; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Monte E; Institute for Agribiotechnology Research (CIALE), Department of Microbiology and Genetics, University of Salamanca, Salamanca, Spain., Ng V; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Pang G; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Key lab of organic-based fertilizers of China, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, China., Pangilinan J; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Peng M; Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands., Piombo E; Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden., Pócsi I; Department of Molecular Biotechnology and Microbiology, Institute of Biotechnology, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary.; HUN-REN-UD Fungal Stress Biology Research Group, Debrecen, Hungary., Rahimi MJ; Department of Biochemical Technology, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria., Reddy SK; Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands.; Wageningen University, Wageningen, Netherlands., Riley R; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Sarrocco S; Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy., Schmal M; Department of Biochemical Technology, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria., Schmoll M; Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria., Szűcs A; Department of Biotechnology and Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary., Woo SL; Department of Pharmacy, University of Naples Federico II, Naples, Italy., Yarden O; Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel., Zeilinger S; Department of Microbiology, University of Innsbruck, Innsbruck, Austria., Zimmermann C; Department of Biochemical Technology, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria., Shelest E; School of Biological Sciences, University of Portsmouth, Portsmouth, UK., Tsang A; Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada., Berka R; ADM, Davis, CA, USA., de Vries RP; Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands., Grigoriev IV; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Plant and Microbial Biology Department, University of California Berkeley, Berkeley, CA, USA., Druzhinina IS; Royal Botanic Gardens, Kew, Richmond, UK. i.druzhinina@kew.org.
Source: Nature microbiology [Nat Microbiol] 2026 Mar; Vol. 11 (3), pp. 815-831. Date of Electronic Publication: 2026 Mar 03.
Publication Type: Journal Article
Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101674869 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2058-5276 (Electronic) Linking ISSN: 20585276 NLM ISO Abbreviation: Nat Microbiol Subsets: MEDLINE
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          Dates:
            – D: 01
              M: 03
              Text: 2026 Mar
              Type: published
              Y: 2026
          Identifiers:
            – Type: issn-electronic
              Value: 2058-5276
          Numbering:
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              Value: 11
            – Type: issue
              Value: 3
          Titles:
            – TitleFull: Nature microbiology
              Type: main
ResultId 1