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Umi-pipeline-nf: a modular and scalable workflow for UMI-tagged nanopore amplicon analysis with real-time sequencing integration and GPU-acceleration.

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Title: Umi-pipeline-nf: a modular and scalable workflow for UMI-tagged nanopore amplicon analysis with real-time sequencing integration and GPU-acceleration.
Authors: Amstler S; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria., Forer L; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria., Escherich L; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria., Schönherr S; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria., Coassin S; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria.
Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 Apr 07; Vol. 42 (4).
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Amstler+S%22">Amstler S</searchLink>; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria.<br /><searchLink fieldCode="AU" term="%22Forer+L%22">Forer L</searchLink>; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria.<br /><searchLink fieldCode="AU" term="%22Escherich+L%22">Escherich L</searchLink>; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria.<br /><searchLink fieldCode="AU" term="%22Schönherr+S%22">Schönherr S</searchLink>; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria.<br /><searchLink fieldCode="AU" term="%22Coassin+S%22">Coassin S</searchLink>; Institute of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck 6020, Austria.
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        Value: 10.1093/bioinformatics/btag160
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              Text: 2026 Apr 07
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