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The emergence and molecular evolution of H5N1 influenza viruses in United States dairy cattle.

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Title: The emergence and molecular evolution of H5N1 influenza viruses in United States dairy cattle.
Authors: Pekar JE; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK., Gangavarapu K; Department of Translational Medicine, The Scripps Research Institute, La Jolla, CA, USA., Crespo-Bellido A; Division of Intramural Research, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892., Peacock TP; The Pirbright Institute, Woking, UK, GU24 0NF.; Department of Infectious Disease, Imperial College London, UK, W2 1PG., Wertheim JO; Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA., Dudas G; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Joy JB; British Columbia Centre for Excellence in HIV/AIDS.; Bioinformatics, University of British Columbia.; Department of Medicine, University of British Columbia, Vancouver, BC, Canada., Chand M; UK Health Security Agency, London UK., Débarre F; Institut d'Écologie et des Sciences de l'Environnement (IEES-Paris, UMR 7618), CNRS, Sorbonne Université, UPEC, IRD, INRAE, Paris, France., Gangavarapu P; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Goldhill DH; Department of Pathobiology and Population Sciences, Royal Veterinary College, London, UK., Groves N; UK Health Security Agency, London UK., Ji X; Department of Statistics, Iowa State University, Ames, IA 50011, USA., Serrano LM; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85705, USA., Moncla L; Department of Pathobiology, University of Pennsylvania, PA 19104, USA., Rasmussen AL; Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, SK, Canada S8N 5E3., Ruis C; VPD Heart & Lung Research Institute, Department of Medicine, University of Cambridge, Cambridge, UK.; Cambridge Centre for AI in Medicine, University of Cambridge, Cambridge, UK.; Department of Veterinary Medicine, University of Cambridge, Cambridge, UK., Venkatesh D; Department of Biology, University of Oxford, Oxford OX1 3SY, UK., Kraemer MUG; Department of Biology, University of Oxford, Oxford OX1 3SY, UK.; Pandemic Sciences Institute, University of Oxford, Oxford, UK., Pybus OG; Department of Pathobiology and Population Sciences, Royal Veterinary College, London, UK.; Department of Biology, University of Oxford, Oxford OX1 3SY, UK.; Pandemic Sciences Institute, University of Oxford, Oxford, UK., Andersen KG; Department of Translational Medicine, The Scripps Research Institute, La Jolla, CA, USA., Suchard MA; Department of Biostatistics, University of California, Los Angeles, Los Angeles, CA 90095, USA., Nelson MI; Division of Intramural Research, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892., Lemey P; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium., Worobey M; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85705, USA., Rambaut A; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Apr 01. Date of Electronic Publication: 2026 Apr 01.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: The emergence and molecular evolution of H5N1 influenza viruses in United States dairy cattle.
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  Data: <searchLink fieldCode="AU" term="%22Pekar+JE%22">Pekar JE</searchLink>; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK.<br /><searchLink fieldCode="AU" term="%22Gangavarapu+K%22">Gangavarapu K</searchLink>; Department of Translational Medicine, The Scripps Research Institute, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Crespo-Bellido+A%22">Crespo-Bellido A</searchLink>; Division of Intramural Research, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892.<br /><searchLink fieldCode="AU" term="%22Peacock+TP%22">Peacock TP</searchLink>; The Pirbright Institute, Woking, UK, GU24 0NF.; Department of Infectious Disease, Imperial College London, UK, W2 1PG.<br /><searchLink fieldCode="AU" term="%22Wertheim+JO%22">Wertheim JO</searchLink>; Department of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.<br /><searchLink fieldCode="AU" term="%22Dudas+G%22">Dudas G</searchLink>; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.<br /><searchLink fieldCode="AU" term="%22Joy+JB%22">Joy JB</searchLink>; British Columbia Centre for Excellence in HIV/AIDS.; Bioinformatics, University of British Columbia.; Department of Medicine, University of British Columbia, Vancouver, BC, Canada.<br /><searchLink fieldCode="AU" term="%22Chand+M%22">Chand M</searchLink>; UK Health Security Agency, London UK.<br /><searchLink fieldCode="AU" term="%22Débarre+F%22">Débarre F</searchLink>; Institut d'Écologie et des Sciences de l'Environnement (IEES-Paris, UMR 7618), CNRS, Sorbonne Université, UPEC, IRD, INRAE, Paris, France.<br /><searchLink fieldCode="AU" term="%22Gangavarapu+P%22">Gangavarapu P</searchLink>; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Goldhill+DH%22">Goldhill DH</searchLink>; Department of Pathobiology and Population Sciences, Royal Veterinary College, London, UK.<br /><searchLink fieldCode="AU" term="%22Groves+N%22">Groves N</searchLink>; UK Health Security Agency, London UK.<br /><searchLink fieldCode="AU" term="%22Ji+X%22">Ji X</searchLink>; Department of Statistics, Iowa State University, Ames, IA 50011, USA.<br /><searchLink fieldCode="AU" term="%22Serrano+LM%22">Serrano LM</searchLink>; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85705, USA.<br /><searchLink fieldCode="AU" term="%22Moncla+L%22">Moncla L</searchLink>; Department of Pathobiology, University of Pennsylvania, PA 19104, USA.<br /><searchLink fieldCode="AU" term="%22Rasmussen+AL%22">Rasmussen AL</searchLink>; Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, SK, Canada S8N 5E3.<br /><searchLink fieldCode="AU" term="%22Ruis+C%22">Ruis C</searchLink>; VPD Heart & Lung Research Institute, Department of Medicine, University of Cambridge, Cambridge, UK.; Cambridge Centre for AI in Medicine, University of Cambridge, Cambridge, UK.; Department of Veterinary Medicine, University of Cambridge, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Venkatesh+D%22">Venkatesh D</searchLink>; Department of Biology, University of Oxford, Oxford OX1 3SY, UK.<br /><searchLink fieldCode="AU" term="%22Kraemer+MUG%22">Kraemer MUG</searchLink>; Department of Biology, University of Oxford, Oxford OX1 3SY, UK.; Pandemic Sciences Institute, University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Pybus+OG%22">Pybus OG</searchLink>; Department of Pathobiology and Population Sciences, Royal Veterinary College, London, UK.; Department of Biology, University of Oxford, Oxford OX1 3SY, UK.; Pandemic Sciences Institute, University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Andersen+KG%22">Andersen KG</searchLink>; Department of Translational Medicine, The Scripps Research Institute, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Suchard+MA%22">Suchard MA</searchLink>; Department of Biostatistics, University of California, Los Angeles, Los Angeles, CA 90095, USA.<br /><searchLink fieldCode="AU" term="%22Nelson+MI%22">Nelson MI</searchLink>; Division of Intramural Research, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892.<br /><searchLink fieldCode="AU" term="%22Lemey+P%22">Lemey P</searchLink>; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Worobey+M%22">Worobey M</searchLink>; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85705, USA.<br /><searchLink fieldCode="AU" term="%22Rambaut+A%22">Rambaut A</searchLink>; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK.
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