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Benchmarking plant single cell RNA-sequencing sample processing strategies.

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Title: Benchmarking plant single cell RNA-sequencing sample processing strategies.
Authors: Eekhout T; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; VIB Center for Plant Systems Biology, Ghent, Belgium.; VIB Single Cell Core, VIB, Ghent/Leuven, Belgium., Veirman L; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; VIB Center for Plant Systems Biology, Ghent, Belgium., Block J; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; VIB Center for Plant Systems Biology, Ghent, Belgium., Persyn F; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; VIB Center for Plant Systems Biology, Ghent, Belgium., Goossens V; VIB Screening Core, Ghent, Belgium.; Ghent University Centre for Bioassay Development and Screening (C-BIOS), Ghent, Belgium., Audenaert D; VIB Screening Core, Ghent, Belgium.; Ghent University Centre for Bioassay Development and Screening (C-BIOS), Ghent, Belgium., Isterdael GV; VIB Flow Core, VIB Center for Inflammation Research, Ghent, Belgium.; Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium., Rybel B; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. bert.derybel@psb.vib-ugent.be.; VIB Center for Plant Systems Biology, Ghent, Belgium. bert.derybel@psb.vib-ugent.be., Grones C; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. carolin.grones@wur.nl.; VIB Center for Plant Systems Biology, Ghent, Belgium. carolin.grones@wur.nl.; Laboratory of Cell and Developmental Biology, Cluster of Plant Developmental Biology, Department of Plant Sciences, Wageningen University, Wageningen, The Netherlands. carolin.grones@wur.nl.
Source: The EMBO journal [EMBO J] 2026 Jun; Vol. 45 (12), pp. 4337-4359. Date of Electronic Publication: 2026 May 09.
Publication Type: Journal Article
Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 8208664 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1460-2075 (Electronic) Linking ISSN: 02614189 NLM ISO Abbreviation: EMBO J Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Benchmarking plant single cell RNA-sequencing sample processing strategies.
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  Data: <searchLink fieldCode="AU" term="%22Eekhout+T%22">Eekhout T</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; VIB Center for Plant Systems Biology, Ghent, Belgium.; VIB Single Cell Core, VIB, Ghent/Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Veirman+L%22">Veirman L</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; VIB Center for Plant Systems Biology, Ghent, Belgium.<br /><searchLink fieldCode="AU" term="%22Block+J%22">Block J</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; VIB Center for Plant Systems Biology, Ghent, Belgium.<br /><searchLink fieldCode="AU" term="%22Persyn+F%22">Persyn F</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; VIB Center for Plant Systems Biology, Ghent, Belgium.<br /><searchLink fieldCode="AU" term="%22Goossens+V%22">Goossens V</searchLink>; VIB Screening Core, Ghent, Belgium.; Ghent University Centre for Bioassay Development and Screening (C-BIOS), Ghent, Belgium.<br /><searchLink fieldCode="AU" term="%22Audenaert+D%22">Audenaert D</searchLink>; VIB Screening Core, Ghent, Belgium.; Ghent University Centre for Bioassay Development and Screening (C-BIOS), Ghent, Belgium.<br /><searchLink fieldCode="AU" term="%22Isterdael+GV%22">Isterdael GV</searchLink>; VIB Flow Core, VIB Center for Inflammation Research, Ghent, Belgium.; Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium.<br /><searchLink fieldCode="AU" term="%22Rybel+B%22">Rybel B</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. bert.derybel@psb.vib-ugent.be.; VIB Center for Plant Systems Biology, Ghent, Belgium. bert.derybel@psb.vib-ugent.be.<br /><searchLink fieldCode="AU" term="%22Grones+C%22">Grones C</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. carolin.grones@wur.nl.; VIB Center for Plant Systems Biology, Ghent, Belgium. carolin.grones@wur.nl.; Laboratory of Cell and Developmental Biology, Cluster of Plant Developmental Biology, Department of Plant Sciences, Wageningen University, Wageningen, The Netherlands. carolin.grones@wur.nl.
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  Data: <searchLink fieldCode="JN" term="%228208664%22">The EMBO journal</searchLink> [EMBO J] 2026 Jun; Vol. 45 (12), pp. 4337-4359. <i>Date of Electronic Publication: </i>2026 May 09.
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              Text: 2026 Jun
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