An automated workflow for fungal cell counting, cell size and data analysis: enhancing throughput and accuracy with the cell analysis and counting tool using ilastik software (caactus).
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| Title: | An automated workflow for fungal cell counting, cell size and data analysis: enhancing throughput and accuracy with the cell analysis and counting tool using ilastik software (caactus). |
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| Authors: | Scheler J; Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck, Schöpfstraße 41, Innsbruck, 6020, Tyrol, Austria. jakob.scheler@i-med.ac.at.; Department of Medicine I, Gastroenterology, Hepatology, Endocrinology & Metabolism, Medical University of Innsbruck, Anichstraße 35, Innsbruck, 6020, Tyrol, Austria. jakob.scheler@i-med.ac.at., Kutra D; Cell biology and biophysics, European Molecular Biology Laboratory (EMBL), Meyerhofstraße 1, Heidelberg, 69117, Baden-Württemberg, Germany., Beliveau V; Institute for Human Genetics, Medical University of Innsbruck, Schöpfstraße 24, Innsbruck, 6020, Tyrol, Austria., Seiler J; Department of Statistics, University of Innsbruck, Universitätsstraße 15, Innsbruck, 6020, Tyrol, Austria., Pröll S; Digital Cadiology Lab, University Clinic of Internal Medicine III, Medical University of Innsbruck, Anichstraße 35, Innsbruck, 6020, Tyrol, Austria., Sittel H; Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck, Schöpfstraße 41, Innsbruck, 6020, Tyrol, Austria., Nowak-Rainer A; Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck, Schöpfstraße 41, Innsbruck, 6020, Tyrol, Austria., Holzer H; Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck, Schöpfstraße 41, Innsbruck, 6020, Tyrol, Austria., Lass-Flörl C; Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck, Schöpfstraße 41, Innsbruck, 6020, Tyrol, Austria., Binder U; Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck, Schöpfstraße 41, Innsbruck, 6020, Tyrol, Austria. ulrike.binder@i-med.ac.at. |
| Source: | BMC microbiology [BMC Microbiol] 2026 May 13; Vol. 26 (1). Date of Electronic Publication: 2026 May 13. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180 (Electronic) Linking ISSN: 14712180 NLM ISO Abbreviation: BMC Microbiol Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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