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The food matrix as a confounder in diet‒microbiome studies: methodological challenges and research gaps.

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Title: The food matrix as a confounder in diet‒microbiome studies: methodological challenges and research gaps.
Authors: O'Sullivan E; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA., Solano O; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.; The Hormel Research Institute, University of Minnesota, Austin, MN, USA., Oliveira JS; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.; The Hormel Research Institute, University of Minnesota, Austin, MN, USA., Johnson AJ; Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, MN, USA.; Riddet Institute, Massey University, Palmerston North, New Zealand., Dhital S; Department of Chemical and Biological Engineering, Monash University, Clayton, VIC, Australia., S Pillai PK; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA., Dias F; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA., Ubbink J; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA., Lin AW; The Hormel Research Institute, University of Minnesota, Austin, MN, USA., Teigen L; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.
Source: Gut microbes reports [Gut Microbes Rep] 2026 May 13; Vol. 3 (1), pp. 2671724. Date of Electronic Publication: 2026 May 13 (Print Publication: 2026).
Publication Type: Journal Article; Review
Journal Info: Publisher: Taylor & Francis Country of Publication: United States NLM ID: 9918787563106676 Publication Model: eCollection Cited Medium: Internet ISSN: 2993-3935 (Electronic) Linking ISSN: 29933935 NLM ISO Abbreviation: Gut Microbes Rep Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22O'Sullivan+E%22">O'Sullivan E</searchLink>; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.<br /><searchLink fieldCode="AU" term="%22Solano+O%22">Solano O</searchLink>; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.; The Hormel Research Institute, University of Minnesota, Austin, MN, USA.<br /><searchLink fieldCode="AU" term="%22Oliveira+JS%22">Oliveira JS</searchLink>; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.; The Hormel Research Institute, University of Minnesota, Austin, MN, USA.<br /><searchLink fieldCode="AU" term="%22Johnson+AJ%22">Johnson AJ</searchLink>; Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, MN, USA.; Riddet Institute, Massey University, Palmerston North, New Zealand.<br /><searchLink fieldCode="AU" term="%22Dhital+S%22">Dhital S</searchLink>; Department of Chemical and Biological Engineering, Monash University, Clayton, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22S+Pillai+PK%22">S Pillai PK</searchLink>; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.<br /><searchLink fieldCode="AU" term="%22Dias+F%22">Dias F</searchLink>; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.<br /><searchLink fieldCode="AU" term="%22Ubbink+J%22">Ubbink J</searchLink>; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.<br /><searchLink fieldCode="AU" term="%22Lin+AW%22">Lin AW</searchLink>; The Hormel Research Institute, University of Minnesota, Austin, MN, USA.<br /><searchLink fieldCode="AU" term="%22Teigen+L%22">Teigen L</searchLink>; Department of Food Science and Nutrition, University of Minnesota, St. Paul, MN, USA.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Taylor+%26+Francis%22">Taylor & Francis </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>9918787563106676 <i>Publication Model: </i>eCollection <i>Cited Medium: </i>Internet <i>ISSN: </i>2993-3935 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2229933935%22">29933935 </searchLink><i>NLM ISO Abbreviation: </i>Gut Microbes Rep <i>Subsets: </i>PubMed not MEDLINE
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