One health viral metagenomics for pathogen surveillance: robust mNGS workflows for viral detection and genome recovery from swab and tissue specimens.
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| Title: | One health viral metagenomics for pathogen surveillance: robust mNGS workflows for viral detection and genome recovery from swab and tissue specimens. |
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| Authors: | Russell T; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland., Formiconi E; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland., Murphy A; UCD Conway Institute, University College Dublin, Dublin, D04 E1W1, Ireland., Hortion J; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland., McElroy M; Department of Agriculture, Food, and the Marine Laboratories, Backweston, Celbridge, Kildare, W23 VW2C, Ireland., Casey M; Regional Veterinary Laboratories (RVL) Division, Department of Agriculture, Food and the Marine, Agriculture House, Backweston, Dublin, T12 XD51, Ireland., Cuartero LG; Department of Agriculture, Food, and the Marine Laboratories, Backweston, Celbridge, Kildare, W23 VW2C, Ireland., Mee JF; Teagasc, Moorepark Research Centre, Animal and Bioscience Research Department, Fermoy, P61 P302, Ireland., Jahns H; UCD School of Veterinary Medicine, University College Dublin, Dublin 4, D04 W6F6, Ireland., Kelly C; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; Department of Infectious Diseases, Mater Misericordiae University Hospital, Dublin, D07 AX57, Ireland., Byrne J; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; Department of Infectious Diseases, St Vincent's University Hospital, Dublin, D04 T6F4, Ireland., Feeney ER; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; Department of Infectious Diseases, St Vincent's University Hospital, Dublin, D04 T6F4, Ireland., Mallon PW; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland.; Department of Infectious Diseases, St Vincent's University Hospital, Dublin, D04 T6F4, Ireland., Gautier VW; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland. virginie.gautier@ucd.ie.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland. virginie.gautier@ucd.ie.; UCD Conway Institute, University College Dublin, Dublin, D04 E1W1, Ireland. virginie.gautier@ucd.ie. |
| Source: | BMC microbiology [BMC Microbiol] 2026 May 29; Vol. 26 (1). Date of Electronic Publication: 2026 May 29. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180 (Electronic) Linking ISSN: 14712180 NLM ISO Abbreviation: BMC Microbiol Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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