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Navigating luminal heterogeneity: etiology-based proteogenomic subtyping for targeted treatment strategies in breast cancer.

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Title: Navigating luminal heterogeneity: etiology-based proteogenomic subtyping for targeted treatment strategies in breast cancer.
Authors: Chang YH; Institute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli, Taiwan.; Institute of Statistical Science, Academia Sinica, Taipei, Taiwan.; Center for Cancer Research, Kaohsiung Medical University, Kaohsiung, Taiwan., Chen YJ; Institute of Chemistry, Academia Sinica, Taipei, Taiwan., Hong ZJ; Department of Surgery, Tri-Service General Hospital, National Defense Medical University, Taipei, Taiwan., Hsiao YJ; Institute of Chemistry, Academia Sinica, Taipei, Taiwan., Lin KT; Institute of Chemistry, Academia Sinica, Taipei, Taiwan., Liao GS; Department of Surgery, Tri-Service General Hospital, National Defense Medical University, Taipei, Taiwan., Su SF; Graduate Institute of Oncology, National Taiwan University College of Medicine, Taipei, Taiwan., Lin ZS; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Chen HW; Graduate Institute of Toxicology, National Taiwan University College of Medicine, Taipei, Taiwan., Han CL; Master Program in Clinical Genomics and Proteomics, College of Pharmacy, Taipei Medical University, Taipei, Taiwan., Chen ES; Institute of Chemistry, Academia Sinica, Taipei, Taiwan., Hsu YC; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Chen YM; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Fang H; Institute of Chemistry, Academia Sinica, Taipei, Taiwan., Yang HC; Institute of Chemistry, Academia Sinica, Taipei, Taiwan., Chen YS; Institute of Statistical Science, Academia Sinica, Taipei, Taiwan., Lin CY; Institute of Statistical Science, Academia Sinica, Taipei, Taiwan., Hsu HE; Institute of Chemistry, Academia Sinica, Taipei, Taiwan., Lin CH; Department of Medical Oncology, Cancer Center Branch, National Taiwan University Hospital, Taipei, Taiwan.; Department of Oncology, National Taiwan University Hospital, Taipei, Taiwan., Jiang PL; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Chemistry, National Taiwan University, Taipei, Taiwan., Wu PS; Institute of Chemistry, Academia Sinica, Taipei, Taiwan., Chen CW; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Hung CT; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Wu E; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Chiu WT; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Hsing FN; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Liu TP; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Wang CY; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan., Wang YT; National Center for High-performance Computing, National Institutes of Applied Research, Hsinchu, Taiwan., Yeh CW; National Center for High-performance Computing, National Institutes of Applied Research, Hsinchu, Taiwan., Liao KH; National Center for High-performance Computing, National Institutes of Applied Research, Hsinchu, Taiwan., Robles AI; Office of Cancer Clinical Proteomics Research, National Cancer Institute, National Institutes of Health, Rockville, MD, USA., Rodriguez H; Office of Cancer Clinical Proteomics Research, National Cancer Institute, National Institutes of Health, Rockville, MD, USA., Yang SL; Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan., Hung MC; Graduate Institute of Biomedical Sciences, Cancer Biology and Precision Therapeutics Center, Center for Molecular Medicine, China Medical University, Taichung, Taiwan., Lu YS; Department of Oncology, National Taiwan University Hospital, Taipei, Taiwan. yslu@ntu.edu.tw., Chen HY; Institute of Statistical Science, Academia Sinica, Taipei, Taiwan. hychen@stat.sinica.edu.tw.; Ph.D. Program in Microbial Genomics, National Chung Hsing University, Taichung, Taiwan. hychen@stat.sinica.edu.tw.; Center for Cancer Research, Kaohsiung Medical University, Kaohsiung, Taiwan. hychen@stat.sinica.edu.tw., Yu SL; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan. slyu@ntu.edu.tw.; Department of Laboratory Medicine, National Taiwan University Hospital, Taipei, Taiwan. slyu@ntu.edu.tw., Yu JC; Department of Surgery, Tri-Service General Hospital, National Defense Medical University, Taipei, Taiwan. doc20106@ndmctsgh.edu.tw., Chen YJ; Institute of Chemistry, Academia Sinica, Taipei, Taiwan. yujuchen@as.edu.tw.; Department of Chemistry, National Taiwan University, Taipei, Taiwan. yujuchen@as.edu.tw.
Source: Molecular cancer [Mol Cancer] 2026 Jun 03. Date of Electronic Publication: 2026 Jun 03.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101147698 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4598 (Electronic) Linking ISSN: 14764598 NLM ISO Abbreviation: Mol Cancer Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Chang+YH%22">Chang YH</searchLink>; Institute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli, Taiwan.; Institute of Statistical Science, Academia Sinica, Taipei, Taiwan.; Center for Cancer Research, Kaohsiung Medical University, Kaohsiung, Taiwan.<br /><searchLink fieldCode="AU" term="%22Chen+YJ%22">Chen YJ</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Hong+ZJ%22">Hong ZJ</searchLink>; Department of Surgery, Tri-Service General Hospital, National Defense Medical University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Hsiao+YJ%22">Hsiao YJ</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Lin+KT%22">Lin KT</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Liao+GS%22">Liao GS</searchLink>; Department of Surgery, Tri-Service General Hospital, National Defense Medical University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Su+SF%22">Su SF</searchLink>; Graduate Institute of Oncology, National Taiwan University College of Medicine, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Lin+ZS%22">Lin ZS</searchLink>; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Chen+HW%22">Chen HW</searchLink>; Graduate Institute of Toxicology, National Taiwan University College of Medicine, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Han+CL%22">Han CL</searchLink>; Master Program in Clinical Genomics and Proteomics, College of Pharmacy, Taipei Medical University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Chen+ES%22">Chen ES</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Hsu+YC%22">Hsu YC</searchLink>; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Chen+YM%22">Chen YM</searchLink>; 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Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Chemistry, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Wu+PS%22">Wu PS</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Chen+CW%22">Chen CW</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Hung+CT%22">Hung CT</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Wu+E%22">Wu E</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Chiu+WT%22">Chiu WT</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan.; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Hsing+FN%22">Hsing FN</searchLink>; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Liu+TP%22">Liu TP</searchLink>; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Wang+CY%22">Wang CY</searchLink>; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Wang+YT%22">Wang YT</searchLink>; National Center for High-performance Computing, National Institutes of Applied Research, Hsinchu, Taiwan.<br /><searchLink fieldCode="AU" term="%22Yeh+CW%22">Yeh CW</searchLink>; National Center for High-performance Computing, National Institutes of Applied Research, Hsinchu, Taiwan.<br /><searchLink fieldCode="AU" term="%22Liao+KH%22">Liao KH</searchLink>; National Center for High-performance Computing, National Institutes of Applied Research, Hsinchu, Taiwan.<br /><searchLink fieldCode="AU" term="%22Robles+AI%22">Robles AI</searchLink>; Office of Cancer Clinical Proteomics Research, National Cancer Institute, National Institutes of Health, Rockville, MD, USA.<br /><searchLink fieldCode="AU" term="%22Rodriguez+H%22">Rodriguez H</searchLink>; Office of Cancer Clinical Proteomics Research, National Cancer Institute, National Institutes of Health, Rockville, MD, USA.<br /><searchLink fieldCode="AU" term="%22Yang+SL%22">Yang SL</searchLink>; Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.<br /><searchLink fieldCode="AU" term="%22Hung+MC%22">Hung MC</searchLink>; Graduate Institute of Biomedical Sciences, Cancer Biology and Precision Therapeutics Center, Center for Molecular Medicine, China Medical University, Taichung, Taiwan.<br /><searchLink fieldCode="AU" term="%22Lu+YS%22">Lu YS</searchLink>; Department of Oncology, National Taiwan University Hospital, Taipei, Taiwan. yslu@ntu.edu.tw.<br /><searchLink fieldCode="AU" term="%22Chen+HY%22">Chen HY</searchLink>; Institute of Statistical Science, Academia Sinica, Taipei, Taiwan. hychen@stat.sinica.edu.tw.; Ph.D. Program in Microbial Genomics, National Chung Hsing University, Taichung, Taiwan. hychen@stat.sinica.edu.tw.; Center for Cancer Research, Kaohsiung Medical University, Kaohsiung, Taiwan. hychen@stat.sinica.edu.tw.<br /><searchLink fieldCode="AU" term="%22Yu+SL%22">Yu SL</searchLink>; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan. slyu@ntu.edu.tw.; Department of Laboratory Medicine, National Taiwan University Hospital, Taipei, Taiwan. slyu@ntu.edu.tw.<br /><searchLink fieldCode="AU" term="%22Yu+JC%22">Yu JC</searchLink>; Department of Surgery, Tri-Service General Hospital, National Defense Medical University, Taipei, Taiwan. doc20106@ndmctsgh.edu.tw.<br /><searchLink fieldCode="AU" term="%22Chen+YJ%22">Chen YJ</searchLink>; Institute of Chemistry, Academia Sinica, Taipei, Taiwan. yujuchen@as.edu.tw.; Department of Chemistry, National Taiwan University, Taipei, Taiwan. yujuchen@as.edu.tw.
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