CUPID-seq enables highly multiplexed amplicon sequencing via combinatorial in-line dual indexing.
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| Title: | CUPID-seq enables highly multiplexed amplicon sequencing via combinatorial in-line dual indexing. |
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| Authors: | Fu B; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA., Porter RL; Biophysics Training Program, Stanford, CA 94305, USA., Shi H; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA., Ea AC; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697, USA., Espeleta AM; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA., Ambat A; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA., Relman DA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.; Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305.; Infectious Diseases Section, Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304, USA., Huang KC; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA., Xue KS; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697, USA.; Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA 92697, USA. |
| Source: | BioRxiv : the preprint server for biology [bioRxiv] 2026 May 21. Date of Electronic Publication: 2026 May 21. |
| Publication Type: | Journal Article; Preprint |
| Journal Info: | Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE |
| Database: | MEDLINE Ultimate |
| FullText | Text: Availability: 0 |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 42239137 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: CUPID-seq enables highly multiplexed amplicon sequencing via combinatorial in-line dual indexing. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Fu+B%22">Fu B</searchLink>; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Porter+RL%22">Porter RL</searchLink>; Biophysics Training Program, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Shi+H%22">Shi H</searchLink>; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Ea+AC%22">Ea AC</searchLink>; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697, USA.<br /><searchLink fieldCode="AU" term="%22Espeleta+AM%22">Espeleta AM</searchLink>; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA.<br /><searchLink fieldCode="AU" term="%22Ambat+A%22">Ambat A</searchLink>; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Relman+DA%22">Relman DA</searchLink>; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.; Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305.; Infectious Diseases Section, Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304, USA.<br /><searchLink fieldCode="AU" term="%22Huang+KC%22">Huang KC</searchLink>; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA.<br /><searchLink fieldCode="AU" term="%22Xue+KS%22">Xue KS</searchLink>; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697, USA.; Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA 92697, USA. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22101680187%22">BioRxiv : the preprint server for biology</searchLink> [bioRxiv] 2026 May 21. <i>Date of Electronic Publication: </i>2026 May 21. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article; Preprint – Name: TitleSource Label: Journal Info Group: Src Data: <i>Country of Publication: </i>United States <i>NLM ID: </i>101680187 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2692-8205 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2226928205%22">26928205 </searchLink><i>NLM ISO Abbreviation: </i>bioRxiv <i>Subsets: </i>PubMed not MEDLINE |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=42239137 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.64898/2026.05.20.726713 Languages: – Code: eng Text: English Titles: – TitleFull: CUPID-seq enables highly multiplexed amplicon sequencing via combinatorial in-line dual indexing. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Fu B – PersonEntity: Name: NameFull: Porter RL – PersonEntity: Name: NameFull: Shi H – PersonEntity: Name: NameFull: Ea AC – PersonEntity: Name: NameFull: Espeleta AM – PersonEntity: Name: NameFull: Ambat A – PersonEntity: Name: NameFull: Relman DA – PersonEntity: Name: NameFull: Huang KC – PersonEntity: Name: NameFull: Xue KS IsPartOfRelationships: – BibEntity: Dates: – D: 21 M: 05 Text: 2026 May 21 Type: published Y: 2026 Identifiers: – Type: issn-electronic Value: 2692-8205 Titles: – TitleFull: BioRxiv : the preprint server for biology Type: main |
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