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Life Identification Numbers: A strain nomenclature approach to aid epidemiological surveillance of bacterial pathogens.

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Title: Life Identification Numbers: A strain nomenclature approach to aid epidemiological surveillance of bacterial pathogens.
Authors: Palma F; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.; Institut Pasteur, Université Paris Cité, Biological Resource Center of Institut Pasteur, Paris, France., Hennart M; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Jolley KA; Department of Biology, University of Oxford, Oxford, United Kingdom., Crestani C; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Wyres KL; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria, Australia.; Centre to Impact AMR, Monash University, Clayton, Victoria, Australia.; Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, United Kingdom., Bridel S; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Yeats CA; Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom., Brancotte B; Institut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub, Paris, France., Raffestin B; Institut Pasteur, Université Paris Cité, HPC Core Facility, Paris, France., David S; Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom., Lam MMC; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria, Australia.; Centre to Impact AMR, Monash University, Clayton, Victoria, Australia., Izdebski R; Department of Molecular Microbiology, National Medicines Institute, Warsaw, Poland., Passet V; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Rodrigues C; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Rethoret-Pasty M; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Combary A; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Cottis S; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Maiden MCJ; Department of Biology, University of Oxford, Oxford, United Kingdom., Aanensen DM; Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom., Holt KE; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria, Australia.; Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, United Kingdom., Criscuolo A; Institut Pasteur, Université Paris Cité, Biological Resource Center of Institut Pasteur, Paris, France., Brisse S; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.; Institut Pasteur, Université Paris Cité, Biological Resource Center of Institut Pasteur, Paris, France.
Source: PLoS biology [PLoS Biol] 2026 Jun 04; Vol. 24 (6), pp. e3003781. Date of Electronic Publication: 2026 Jun 04 (Print Publication: 2026).
Publication Type: Journal Article
Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE
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  Data: Life Identification Numbers: A strain nomenclature approach to aid epidemiological surveillance of bacterial pathogens.
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  Data: <searchLink fieldCode="AU" term="%22Palma+F%22">Palma F</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.; Institut Pasteur, Université Paris Cité, Biological Resource Center of Institut Pasteur, Paris, France.<br /><searchLink fieldCode="AU" term="%22Hennart+M%22">Hennart M</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.<br /><searchLink fieldCode="AU" term="%22Jolley+KA%22">Jolley KA</searchLink>; Department of Biology, University of Oxford, Oxford, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Crestani+C%22">Crestani C</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.<br /><searchLink fieldCode="AU" term="%22Wyres+KL%22">Wyres KL</searchLink>; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria, Australia.; Centre to Impact AMR, Monash University, Clayton, Victoria, Australia.; Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Bridel+S%22">Bridel S</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.<br /><searchLink fieldCode="AU" term="%22Yeats+CA%22">Yeats CA</searchLink>; Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Brancotte+B%22">Brancotte B</searchLink>; Institut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub, Paris, France.<br /><searchLink fieldCode="AU" term="%22Raffestin+B%22">Raffestin B</searchLink>; Institut Pasteur, Université Paris Cité, HPC Core Facility, Paris, France.<br /><searchLink fieldCode="AU" term="%22David+S%22">David S</searchLink>; Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Lam+MMC%22">Lam MMC</searchLink>; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria, Australia.; Centre to Impact AMR, Monash University, Clayton, Victoria, Australia.<br /><searchLink fieldCode="AU" term="%22Izdebski+R%22">Izdebski R</searchLink>; Department of Molecular Microbiology, National Medicines Institute, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Passet+V%22">Passet V</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.<br /><searchLink fieldCode="AU" term="%22Rodrigues+C%22">Rodrigues C</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.<br /><searchLink fieldCode="AU" term="%22Rethoret-Pasty+M%22">Rethoret-Pasty M</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.<br /><searchLink fieldCode="AU" term="%22Combary+A%22">Combary A</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.<br /><searchLink fieldCode="AU" term="%22Cottis+S%22">Cottis S</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.<br /><searchLink fieldCode="AU" term="%22Maiden+MCJ%22">Maiden MCJ</searchLink>; Department of Biology, University of Oxford, Oxford, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Aanensen+DM%22">Aanensen DM</searchLink>; Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Holt+KE%22">Holt KE</searchLink>; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria, Australia.; Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Criscuolo+A%22">Criscuolo A</searchLink>; Institut Pasteur, Université Paris Cité, Biological Resource Center of Institut Pasteur, Paris, France.<br /><searchLink fieldCode="AU" term="%22Brisse+S%22">Brisse S</searchLink>; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.; Institut Pasteur, Université Paris Cité, Biological Resource Center of Institut Pasteur, Paris, France.
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