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Robust footprinting with sample-specific Tn5 bias correction for bulk and single cell ATAC-seq.

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Title: Robust footprinting with sample-specific Tn5 bias correction for bulk and single cell ATAC-seq.
Authors: Lin Y; Department of Statistics and Data Science, Wharton School, University of Pennsylvania, Philadelphia, PA, USA., Wang H; Department of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA, USA., Wilson PC; Division of Diagnostic Innovation, Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. parker.wilson@pennmedicine.upenn.edu.; Penn/CHOP Kidney Innovation Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. parker.wilson@pennmedicine.upenn.edu.; Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. parker.wilson@pennmedicine.upenn.edu., Zhang NR; Department of Statistics and Data Science, Wharton School, University of Pennsylvania, Philadelphia, PA, USA. nzh@wharton.upenn.edu.
Source: Nature communications [Nat Commun] 2026 Jun 09. Date of Electronic Publication: 2026 Jun 09.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Lin+Y%22">Lin Y</searchLink>; Department of Statistics and Data Science, Wharton School, University of Pennsylvania, Philadelphia, PA, USA.<br /><searchLink fieldCode="AU" term="%22Wang+H%22">Wang H</searchLink>; Department of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA, USA.<br /><searchLink fieldCode="AU" term="%22Wilson+PC%22">Wilson PC</searchLink>; Division of Diagnostic Innovation, Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. parker.wilson@pennmedicine.upenn.edu.; Penn/CHOP Kidney Innovation Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. parker.wilson@pennmedicine.upenn.edu.; Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. parker.wilson@pennmedicine.upenn.edu.<br /><searchLink fieldCode="AU" term="%22Zhang+NR%22">Zhang NR</searchLink>; Department of Statistics and Data Science, Wharton School, University of Pennsylvania, Philadelphia, PA, USA. nzh@wharton.upenn.edu.
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        Value: 10.1038/s41467-026-73164-3
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              Text: 2026 Jun 09
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