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Impact of sequencing read quality on whole-genome sequencing outcomes for foodborne pathogens using a BacWORK standardized analysis workflow.

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Title: Impact of sequencing read quality on whole-genome sequencing outcomes for foodborne pathogens using a BacWORK standardized analysis workflow.
Authors: Felten A; ANSES, Ploufragan-Plouzané-Niort Laboratory, VIRPIG Unit, Ploufragan F-22440, France., Merda D; University Paris Est, ANSES, Laboratory for Food Safety, SPAAD Unit, Maisons-Alfort F-94701, France., Vila Nova M; University Paris Est, ANSES, Laboratory for Food Safety, SPAAD Unit, Maisons-Alfort F-94701, France., Touzain F; ANSES, Ploufragan-Plouzané-Niort Laboratory, VIRPIG Unit, Ploufragan F-22440, France., Chesnais V; University Paris Est, ANSES, Laboratory for Food Safety, SPAAD Unit, Maisons-Alfort F-94701, France.
Source: Bioinformatics advances [Bioinform Adv] 2026 May 07; Vol. 6 (1), pp. vbag130. Date of Electronic Publication: 2026 May 07 (Print Publication: 2026).
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9918282081306676 Publication Model: eCollection Cited Medium: Internet ISSN: 2635-0041 (Electronic) Linking ISSN: 26350041 NLM ISO Abbreviation: Bioinform Adv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: Impact of sequencing read quality on whole-genome sequencing outcomes for foodborne pathogens using a BacWORK standardized analysis workflow.
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  Data: <searchLink fieldCode="AU" term="%22Felten+A%22">Felten A</searchLink>; ANSES, Ploufragan-Plouzané-Niort Laboratory, VIRPIG Unit, Ploufragan F-22440, France.<br /><searchLink fieldCode="AU" term="%22Merda+D%22">Merda D</searchLink>; University Paris Est, ANSES, Laboratory for Food Safety, SPAAD Unit, Maisons-Alfort F-94701, France.<br /><searchLink fieldCode="AU" term="%22Vila+Nova+M%22">Vila Nova M</searchLink>; University Paris Est, ANSES, Laboratory for Food Safety, SPAAD Unit, Maisons-Alfort F-94701, France.<br /><searchLink fieldCode="AU" term="%22Touzain+F%22">Touzain F</searchLink>; ANSES, Ploufragan-Plouzané-Niort Laboratory, VIRPIG Unit, Ploufragan F-22440, France.<br /><searchLink fieldCode="AU" term="%22Chesnais+V%22">Chesnais V</searchLink>; University Paris Est, ANSES, Laboratory for Food Safety, SPAAD Unit, Maisons-Alfort F-94701, France.
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  Data: <searchLink fieldCode="JN" term="%229918282081306676%22">Bioinformatics advances</searchLink> [Bioinform Adv] 2026 May 07; Vol. 6 (1), pp. vbag130. <i>Date of Electronic Publication: </i>2026 May 07 (<i>Print Publication: </i>2026).
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              Text: 2026 May 07
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