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Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9.

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Title: Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9.
Authors: Jiao, Chunlei, Sharma, Sahil, Dugar, Gaurav, Peeck, Natalia L., Bischler, Thorsten, Wimmer, Franziska, Yu, Yanying, Barquist, Lars, Schoen, Christoph, Kurzai, Oliver, Sharma, Cynthia M., Beisel, Chase L.
Source: Science (pre-March 2025). 5/28/2021, Vol. 372 Issue 6545, p941-948. 8p. 5 Diagrams.
Subjects: CRISPRs, RNA, DNA, Campylobacter jejuni, SARS-CoV-2, Genetics
Abstract: CRISPR-Cas systems recognize foreign genetic material using CRISPR RNAs (crRNAs). In type II systems, a trans-activating crRNA (tracrRNA) hybridizes to crRNAs to drive their processing and utilization by Cas9. While analyzing Cas9-RNA complexes from Campylobacter jejuni, we discovered tracrRNA hybridizing to cellular RNAs, leading to formation of “noncanonical” crRNAs capable of guiding DNA targeting by Cas9. Our discovery inspired the engineering of reprogrammed tracrRNAs that link the presence of any RNA of interest to DNA targeting with different Cas9 orthologs. This capability became the basis for a multiplexable diagnostic platform termed LEOPARD (leveraging engineered tracrRNAs and on-target DNAs for parallel RNA detection). LEOPARD allowed simultaneous detection of RNAs from different viruses in one test and distinguished severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and its D614G (Asp614→Gly) variant with single-base resolution in patient samples. [ABSTRACT FROM AUTHOR]
Copyright of Science (pre-March 2025) is the property of American Association for the Advancement of Science and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
Database: Psychology and Behavioral Sciences Collection
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  Data: Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9.
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  Data: <searchLink fieldCode="AR" term="%22Jiao%2C+Chunlei%22">Jiao, Chunlei</searchLink><br /><searchLink fieldCode="AR" term="%22Sharma%2C+Sahil%22">Sharma, Sahil</searchLink><br /><searchLink fieldCode="AR" term="%22Dugar%2C+Gaurav%22">Dugar, Gaurav</searchLink><br /><searchLink fieldCode="AR" term="%22Peeck%2C+Natalia+L%2E%22">Peeck, Natalia L.</searchLink><br /><searchLink fieldCode="AR" term="%22Bischler%2C+Thorsten%22">Bischler, Thorsten</searchLink><br /><searchLink fieldCode="AR" term="%22Wimmer%2C+Franziska%22">Wimmer, Franziska</searchLink><br /><searchLink fieldCode="AR" term="%22Yu%2C+Yanying%22">Yu, Yanying</searchLink><br /><searchLink fieldCode="AR" term="%22Barquist%2C+Lars%22">Barquist, Lars</searchLink><br /><searchLink fieldCode="AR" term="%22Schoen%2C+Christoph%22">Schoen, Christoph</searchLink><br /><searchLink fieldCode="AR" term="%22Kurzai%2C+Oliver%22">Kurzai, Oliver</searchLink><br /><searchLink fieldCode="AR" term="%22Sharma%2C+Cynthia+M%2E%22">Sharma, Cynthia M.</searchLink><br /><searchLink fieldCode="AR" term="%22Beisel%2C+Chase+L%2E%22">Beisel, Chase L.</searchLink>
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  Data: <searchLink fieldCode="JN" term="%22Science+%28pre-March+2025%29%22">Science (pre-March 2025)</searchLink>. 5/28/2021, Vol. 372 Issue 6545, p941-948. 8p. 5 Diagrams.
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  Data: <searchLink fieldCode="DE" term="%22CRISPRs%22">CRISPRs</searchLink><br /><searchLink fieldCode="DE" term="%22RNA%22">RNA</searchLink><br /><searchLink fieldCode="DE" term="%22DNA%22">DNA</searchLink><br /><searchLink fieldCode="DE" term="%22Campylobacter+jejuni%22">Campylobacter jejuni</searchLink><br /><searchLink fieldCode="DE" term="%22SARS-CoV-2%22">SARS-CoV-2</searchLink><br /><searchLink fieldCode="DE" term="%22Genetics%22">Genetics</searchLink>
– Name: Abstract
  Label: Abstract
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  Data: CRISPR-Cas systems recognize foreign genetic material using CRISPR RNAs (crRNAs). In type II systems, a trans-activating crRNA (tracrRNA) hybridizes to crRNAs to drive their processing and utilization by Cas9. While analyzing Cas9-RNA complexes from Campylobacter jejuni, we discovered tracrRNA hybridizing to cellular RNAs, leading to formation of “noncanonical” crRNAs capable of guiding DNA targeting by Cas9. Our discovery inspired the engineering of reprogrammed tracrRNAs that link the presence of any RNA of interest to DNA targeting with different Cas9 orthologs. This capability became the basis for a multiplexable diagnostic platform termed LEOPARD (leveraging engineered tracrRNAs and on-target DNAs for parallel RNA detection). LEOPARD allowed simultaneous detection of RNAs from different viruses in one test and distinguished severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and its D614G (Asp614→Gly) variant with single-base resolution in patient samples. [ABSTRACT FROM AUTHOR]
– Name: AbstractSuppliedCopyright
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  Data: <i>Copyright of Science (pre-March 2025) is the property of American Association for the Advancement of Science and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.)
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              Text: 5/28/2021
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