Bibliographic Details
| Title: |
Rates of DNA Sequence Profiles for Practical Values of Read Lengths. |
| Authors: |
Chang, Zuling1, Chrisnata, Johan2, Ezerman, Martianus Frederic2, Kiah, Han Mao2 |
| Source: |
IEEE Transactions on Information Theory. Nov2017, Vol. 63 Issue 11, p7166-7177. 12p. |
| Subjects: |
Nucleotide sequencing, DNA data banks, DNA synthesis, Nanopores, Macromolecules |
| Abstract: |
A recent study by one of the authors has demonstrated the importance of profile vectors in DNA-based data storage. We provide exact values and lower bounds on the number of profile vectors for finite values of alphabet size q , read length \ell , and word length n . Consequently, we demonstrate that for q\ge 2 , the number of profile vectors is at least q^{\kappa n} with \kappa $ very close to 1. In addition to enumeration results, we provide a set of efficient encoding and decoding algorithms for certain families of profile vectors. [ABSTRACT FROM PUBLISHER] |
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| Database: |
Engineering Source |
