Rates of DNA Sequence Profiles for Practical Values of Read Lengths.
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| Title: | Rates of DNA Sequence Profiles for Practical Values of Read Lengths. |
|---|---|
| Authors: | Chang, Zuling1, Chrisnata, Johan2, Ezerman, Martianus Frederic2, Kiah, Han Mao2 |
| Source: | IEEE Transactions on Information Theory. Nov2017, Vol. 63 Issue 11, p7166-7177. 12p. |
| Subjects: | Nucleotide sequencing, DNA data banks, DNA synthesis, Nanopores, Macromolecules |
| Abstract: | A recent study by one of the authors has demonstrated the importance of profile vectors in DNA-based data storage. We provide exact values and lower bounds on the number of profile vectors for finite values of alphabet size q , read length \ell , and word length n . Consequently, we demonstrate that for q\ge 2 , the number of profile vectors is at least q^{\kappa n} with \kappa $ very close to 1. In addition to enumeration results, we provide a set of efficient encoding and decoding algorithms for certain families of profile vectors. [ABSTRACT FROM PUBLISHER] |
| Copyright of IEEE Transactions on Information Theory is the property of IEEE and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.) | |
| Database: | Engineering Source |
| FullText | Text: Availability: 0 |
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| Header | DbId: egs DbLabel: Engineering Source An: 125813369 AccessLevel: 6 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: Rates of DNA Sequence Profiles for Practical Values of Read Lengths. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AR" term="%22Chang%2C+Zuling%22">Chang, Zuling</searchLink><relatesTo>1</relatesTo><br /><searchLink fieldCode="AR" term="%22Chrisnata%2C+Johan%22">Chrisnata, Johan</searchLink><relatesTo>2</relatesTo><br /><searchLink fieldCode="AR" term="%22Ezerman%2C+Martianus+Frederic%22">Ezerman, Martianus Frederic</searchLink><relatesTo>2</relatesTo><br /><searchLink fieldCode="AR" term="%22Kiah%2C+Han+Mao%22">Kiah, Han Mao</searchLink><relatesTo>2</relatesTo> – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22IEEE+Transactions+on+Information+Theory%22">IEEE Transactions on Information Theory</searchLink>. Nov2017, Vol. 63 Issue 11, p7166-7177. 12p. – Name: Subject Label: Subjects Group: Su Data: <searchLink fieldCode="DE" term="%22Nucleotide+sequencing%22">Nucleotide sequencing</searchLink><br /><searchLink fieldCode="DE" term="%22DNA+data+banks%22">DNA data banks</searchLink><br /><searchLink fieldCode="DE" term="%22DNA+synthesis%22">DNA synthesis</searchLink><br /><searchLink fieldCode="DE" term="%22Nanopores%22">Nanopores</searchLink><br /><searchLink fieldCode="DE" term="%22Macromolecules%22">Macromolecules</searchLink> – Name: Abstract Label: Abstract Group: Ab Data: A recent study by one of the authors has demonstrated the importance of profile vectors in DNA-based data storage. We provide exact values and lower bounds on the number of profile vectors for finite values of alphabet size q , read length \ell , and word length n . Consequently, we demonstrate that for q\ge 2 , the number of profile vectors is at least q^{\kappa n} with \kappa $ very close to 1. In addition to enumeration results, we provide a set of efficient encoding and decoding algorithms for certain families of profile vectors. [ABSTRACT FROM PUBLISHER] – Name: AbstractSuppliedCopyright Label: Group: Ab Data: <i>Copyright of IEEE Transactions on Information Theory is the property of IEEE and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.) |
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| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1109/TIT.2017.2747557 Languages: – Code: eng Text: English PhysicalDescription: Pagination: PageCount: 12 StartPage: 7166 Subjects: – SubjectFull: Nucleotide sequencing Type: general – SubjectFull: DNA data banks Type: general – SubjectFull: DNA synthesis Type: general – SubjectFull: Nanopores Type: general – SubjectFull: Macromolecules Type: general Titles: – TitleFull: Rates of DNA Sequence Profiles for Practical Values of Read Lengths. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Chang, Zuling – PersonEntity: Name: NameFull: Chrisnata, Johan – PersonEntity: Name: NameFull: Ezerman, Martianus Frederic – PersonEntity: Name: NameFull: Kiah, Han Mao IsPartOfRelationships: – BibEntity: Dates: – D: 01 M: 11 Text: Nov2017 Type: published Y: 2017 Identifiers: – Type: issn-print Value: 00189448 Numbering: – Type: volume Value: 63 – Type: issue Value: 11 Titles: – TitleFull: IEEE Transactions on Information Theory Type: main |
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