Bibliographic Details
| Title: |
DIZZY:: STOCHASTIC SIMULATION OF LARGE-SCALE GENETIC REGULATORY NETWORKS. |
| Authors: |
RAMSEY, STEPHEN1, ORRELL, DAVID1, BOLOURI, HAMID1 hbolouri@systemsbiology.org |
| Source: |
Journal of Bioinformatics & Computational Biology. Apr2005, Vol. 3 Issue 2, p415-436. 22p. |
| Subjects: |
Genetic regulation, Stochastic processes, Computer software, Computer simulation, Cellular control mechanisms, Molecular genetics |
| Abstract: |
We describe Dizzy, a software tool for stochastically and deterministically modeling the spatially homogeneous kinetics of integrated large-scale genetic, metabolic, and signaling networks. Notable features include a modular simulation framework, reusable modeling elements, complex kinetic rate laws, multi-step reaction processes, steady-state noise estimation, and spatial compartmentalization. [ABSTRACT FROM AUTHOR] |
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| Database: |
Engineering Source |
