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DIZZY:: STOCHASTIC SIMULATION OF LARGE-SCALE GENETIC REGULATORY NETWORKS.

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Title: DIZZY:: STOCHASTIC SIMULATION OF LARGE-SCALE GENETIC REGULATORY NETWORKS.
Authors: RAMSEY, STEPHEN1, ORRELL, DAVID1, BOLOURI, HAMID1 hbolouri@systemsbiology.org
Source: Journal of Bioinformatics & Computational Biology. Apr2005, Vol. 3 Issue 2, p415-436. 22p.
Subjects: Genetic regulation, Stochastic processes, Computer software, Computer simulation, Cellular control mechanisms, Molecular genetics
Abstract: We describe Dizzy, a software tool for stochastically and deterministically modeling the spatially homogeneous kinetics of integrated large-scale genetic, metabolic, and signaling networks. Notable features include a modular simulation framework, reusable modeling elements, complex kinetic rate laws, multi-step reaction processes, steady-state noise estimation, and spatial compartmentalization. [ABSTRACT FROM AUTHOR]
Copyright of Journal of Bioinformatics & Computational Biology is the property of World Scientific Publishing Company and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
Database: Engineering Source
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DbLabel: Engineering Source
An: 16746144
AccessLevel: 6
PubType: Academic Journal
PubTypeId: academicJournal
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  Data: DIZZY:: STOCHASTIC SIMULATION OF LARGE-SCALE GENETIC REGULATORY NETWORKS.
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  Data: <searchLink fieldCode="AR" term="%22RAMSEY%2C+STEPHEN%22">RAMSEY, STEPHEN</searchLink><relatesTo>1</relatesTo><br /><searchLink fieldCode="AR" term="%22ORRELL%2C+DAVID%22">ORRELL, DAVID</searchLink><relatesTo>1</relatesTo><br /><searchLink fieldCode="AR" term="%22BOLOURI%2C+HAMID%22">BOLOURI, HAMID</searchLink><relatesTo>1</relatesTo><i> hbolouri@systemsbiology.org</i>
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  Data: <searchLink fieldCode="JN" term="%22Journal+of+Bioinformatics+%26+Computational+Biology%22">Journal of Bioinformatics & Computational Biology</searchLink>. Apr2005, Vol. 3 Issue 2, p415-436. 22p.
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  Data: <searchLink fieldCode="DE" term="%22Genetic+regulation%22">Genetic regulation</searchLink><br /><searchLink fieldCode="DE" term="%22Stochastic+processes%22">Stochastic processes</searchLink><br /><searchLink fieldCode="DE" term="%22Computer+software%22">Computer software</searchLink><br /><searchLink fieldCode="DE" term="%22Computer+simulation%22">Computer simulation</searchLink><br /><searchLink fieldCode="DE" term="%22Cellular+control+mechanisms%22">Cellular control mechanisms</searchLink><br /><searchLink fieldCode="DE" term="%22Molecular+genetics%22">Molecular genetics</searchLink>
– Name: Abstract
  Label: Abstract
  Group: Ab
  Data: We describe Dizzy, a software tool for stochastically and deterministically modeling the spatially homogeneous kinetics of integrated large-scale genetic, metabolic, and signaling networks. Notable features include a modular simulation framework, reusable modeling elements, complex kinetic rate laws, multi-step reaction processes, steady-state noise estimation, and spatial compartmentalization. [ABSTRACT FROM AUTHOR]
– Name: AbstractSuppliedCopyright
  Label:
  Group: Ab
  Data: <i>Copyright of Journal of Bioinformatics & Computational Biology is the property of World Scientific Publishing Company and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.)
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      – Type: doi
        Value: 10.1142/S0219720005001132
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      – Code: eng
        Text: English
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        PageCount: 22
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      – SubjectFull: Genetic regulation
        Type: general
      – SubjectFull: Stochastic processes
        Type: general
      – SubjectFull: Computer software
        Type: general
      – SubjectFull: Computer simulation
        Type: general
      – SubjectFull: Cellular control mechanisms
        Type: general
      – SubjectFull: Molecular genetics
        Type: general
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      – TitleFull: DIZZY:: STOCHASTIC SIMULATION OF LARGE-SCALE GENETIC REGULATORY NETWORKS.
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            NameFull: RAMSEY, STEPHEN
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            NameFull: ORRELL, DAVID
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              Text: Apr2005
              Type: published
              Y: 2005
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            – TitleFull: Journal of Bioinformatics & Computational Biology
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