Bibliographic Details
| Title: |
OrthoXML-Tools: A Toolkit for Manipulating OrthoXML Files for Orthology Data. |
| Authors: |
Yazdizadeh Kharrazi, Ali1 (AUTHOR), Altenhoff, Adrian M.2,3 (AUTHOR), Romashchenko, Nikolai3,4 (AUTHOR), Dessimoz, Christophe3,4 (AUTHOR), Majidian, Sina5 (AUTHOR) smajidi5@jhu.edu |
| Source: |
Journal of Molecular Evolution. Dec2025, Vol. 93 Issue 6, p800-805. 6p. |
| Subjects: |
Standardization, Utilities (Computer programs), Databases, Comparative genomics, Metadata, Computer file management, Data release |
| Abstract: |
The OrthoXML file is a standard file format for orthology data. It provides a standardized structure for describing orthologous and paralogous relationships while allowing the user to store custom and database-specific data in the same format. Although many orthology databases use it as a way to export data, there is no comprehensive toolkit for working with this format. Here, we introduce the OrthoXML-tools (https://github.com/DessimozLab/orthoxml-tools), a comprehensive toolkit for loading, manipulating, and exporting the OrthoXML files to other formats. We show its capabilities and performance on our benchmarks. [ABSTRACT FROM AUTHOR] |
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| Database: |
Engineering Source |
