HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies.
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| Title: | HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies. |
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| Authors: | Zheng Q; Department of Dermatology and Microbiology, Perelman School of Medicine, University of Pennsylvania, 421 Curie Blvd, BRB 1046/7, Philadelphia, PA, 19104, USA. zhengqi@pennmedicine.upenn.edu., Bartow-McKenney C; Genomics and Computational Biology Program, Department of Dermatology, University of Pennsylvania, Philadelphia, USA., Meisel JS; Genomics and Computational Biology Program, Department of Dermatology, University of Pennsylvania, Philadelphia, USA., Grice EA; Department of Dermatology and Microbiology, Perelman School of Medicine, University of Pennsylvania, 421 Curie Blvd, BRB 1046/7, Philadelphia, PA, 19104, USA. egrice@pennmedicine.upenn.edu.; Genomics and Computational Biology Program, Department of Dermatology, University of Pennsylvania, Philadelphia, USA. egrice@pennmedicine.upenn.edu. |
| Source: | Genome biology [Genome Biol] 2018 Jun 27; Vol. 19 (1), pp. 82. Date of Electronic Publication: 2018 Jun 27. |
| Publication Type: | Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't |
| Journal Info: | Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 1474-760X |
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| DOI: | 10.1186/s13059-018-1450-0 |
