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Construction and comparison of three reference-quality genome assemblies for soybean.

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Title: Construction and comparison of three reference-quality genome assemblies for soybean.
Authors: Valliyodan B; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, 65211, MO, USA.; Department of Agriculture and Environmental Sciences, Lincoln University, Jefferson City, 65101, MO, USA., Cannon SB; Corn Insects and Crop Genetics Research Unit, US Department of Agriculture-Agricultural Research Service, Ames, 50011, IA, USA., Bayer PE; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia., Shu S; Department of Energy Joint Genome Institute, Walnut Creek, 94598, CA, USA., Brown AV; Corn Insects and Crop Genetics Research Unit, US Department of Agriculture-Agricultural Research Service, Ames, 50011, IA, USA., Ren L; Interdepartmental Genetics Program, Iowa State University, Ames, 50011, IA, USA., Jenkins J; Hudson-Alpha Institute for Biotechnology, Huntsville, 35806, AL, USA., Chung CY; Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region, China., Chan TF; Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region, China., Daum CG; Department of Energy Joint Genome Institute, Walnut Creek, 94598, CA, USA., Plott C; Hudson-Alpha Institute for Biotechnology, Huntsville, 35806, AL, USA., Hastie A; Bionano Genomics, San Diego, 92121, CA, USA., Baruch K; NRGene Ltd., Ness Ziona, 7403648, Israel., Barry KW; Department of Energy Joint Genome Institute, Walnut Creek, 94598, CA, USA., Huang W; Department of Agronomy, Iowa State University, Ames, 50011, IA, USA., Patil G; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, 65211, MO, USA., Varshney RK; Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502 324, India., Hu H; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia., Batley J; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia., Yuan Y; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia., Song Q; Soybean Genomics and Improvement Lab, US Department of Agriculture - Agricultural Research Service, Beltsville, 20705, MD, USA., Stupar RM; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, 55108, MN, USA., Goodstein DM; Department of Energy Joint Genome Institute, Walnut Creek, 94598, CA, USA., Stacey G; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, 65211, MO, USA., Lam HM; Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region, China., Jackson SA; Center for Applied Genetic Technologies, University of Georgia, Athens, 30602, GA, USA., Schmutz J; Hudson-Alpha Institute for Biotechnology, Huntsville, 35806, AL, USA., Grimwood J; Hudson-Alpha Institute for Biotechnology, Huntsville, 35806, AL, USA., Edwards D; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia., Nguyen HT; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, 65211, MO, USA.
Source: The Plant journal : for cell and molecular biology [Plant J] 2019 Dec; Vol. 100 (5), pp. 1066-1082. Date of Electronic Publication: 2019 Oct 28.
Publication Type: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: Blackwell Scientific Publishers and BIOS Scientific Publishers in association with the Society for Experimental Biology Country of Publication: England NLM ID: 9207397 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-313X (Electronic) Linking ISSN: 09607412 NLM ISO Abbreviation: Plant J Subsets: MEDLINE
Database: MEDLINE Ultimate
FullText Text:
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DbLabel: MEDLINE Ultimate
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PubType: Academic Journal
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  Data: Construction and comparison of three reference-quality genome assemblies for soybean.
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  Data: <searchLink fieldCode="AU" term="%22Valliyodan+B%22">Valliyodan B</searchLink>; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, 65211, MO, USA.; Department of Agriculture and Environmental Sciences, Lincoln University, Jefferson City, 65101, MO, USA.<br /><searchLink fieldCode="AU" term="%22Cannon+SB%22">Cannon SB</searchLink>; Corn Insects and Crop Genetics Research Unit, US Department of Agriculture-Agricultural Research Service, Ames, 50011, IA, USA.<br /><searchLink fieldCode="AU" term="%22Bayer+PE%22">Bayer PE</searchLink>; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia.<br /><searchLink fieldCode="AU" term="%22Shu+S%22">Shu S</searchLink>; Department of Energy Joint Genome Institute, Walnut Creek, 94598, CA, USA.<br /><searchLink fieldCode="AU" term="%22Brown+AV%22">Brown AV</searchLink>; Corn Insects and Crop Genetics Research Unit, US Department of Agriculture-Agricultural Research Service, Ames, 50011, IA, USA.<br /><searchLink fieldCode="AU" term="%22Ren+L%22">Ren L</searchLink>; Interdepartmental Genetics Program, Iowa State University, Ames, 50011, IA, USA.<br /><searchLink fieldCode="AU" term="%22Jenkins+J%22">Jenkins J</searchLink>; Hudson-Alpha Institute for Biotechnology, Huntsville, 35806, AL, USA.<br /><searchLink fieldCode="AU" term="%22Chung+CY%22">Chung CY</searchLink>; Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region, China.<br /><searchLink fieldCode="AU" term="%22Chan+TF%22">Chan TF</searchLink>; Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region, China.<br /><searchLink fieldCode="AU" term="%22Daum+CG%22">Daum CG</searchLink>; Department of Energy Joint Genome Institute, Walnut Creek, 94598, CA, USA.<br /><searchLink fieldCode="AU" term="%22Plott+C%22">Plott C</searchLink>; Hudson-Alpha Institute for Biotechnology, Huntsville, 35806, AL, USA.<br /><searchLink fieldCode="AU" term="%22Hastie+A%22">Hastie A</searchLink>; Bionano Genomics, San Diego, 92121, CA, USA.<br /><searchLink fieldCode="AU" term="%22Baruch+K%22">Baruch K</searchLink>; NRGene Ltd., Ness Ziona, 7403648, Israel.<br /><searchLink fieldCode="AU" term="%22Barry+KW%22">Barry KW</searchLink>; Department of Energy Joint Genome Institute, Walnut Creek, 94598, CA, USA.<br /><searchLink fieldCode="AU" term="%22Huang+W%22">Huang W</searchLink>; Department of Agronomy, Iowa State University, Ames, 50011, IA, USA.<br /><searchLink fieldCode="AU" term="%22Patil+G%22">Patil G</searchLink>; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, 65211, MO, USA.<br /><searchLink fieldCode="AU" term="%22Varshney+RK%22">Varshney RK</searchLink>; Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502 324, India.<br /><searchLink fieldCode="AU" term="%22Hu+H%22">Hu H</searchLink>; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia.<br /><searchLink fieldCode="AU" term="%22Batley+J%22">Batley J</searchLink>; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia.<br /><searchLink fieldCode="AU" term="%22Yuan+Y%22">Yuan Y</searchLink>; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia.<br /><searchLink fieldCode="AU" term="%22Song+Q%22">Song Q</searchLink>; Soybean Genomics and Improvement Lab, US Department of Agriculture - Agricultural Research Service, Beltsville, 20705, MD, USA.<br /><searchLink fieldCode="AU" term="%22Stupar+RM%22">Stupar RM</searchLink>; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, 55108, MN, USA.<br /><searchLink fieldCode="AU" term="%22Goodstein+DM%22">Goodstein DM</searchLink>; Department of Energy Joint Genome Institute, Walnut Creek, 94598, CA, USA.<br /><searchLink fieldCode="AU" term="%22Stacey+G%22">Stacey G</searchLink>; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, 65211, MO, USA.<br /><searchLink fieldCode="AU" term="%22Lam+HM%22">Lam HM</searchLink>; Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region, China.<br /><searchLink fieldCode="AU" term="%22Jackson+SA%22">Jackson SA</searchLink>; Center for Applied Genetic Technologies, University of Georgia, Athens, 30602, GA, USA.<br /><searchLink fieldCode="AU" term="%22Schmutz+J%22">Schmutz J</searchLink>; Hudson-Alpha Institute for Biotechnology, Huntsville, 35806, AL, USA.<br /><searchLink fieldCode="AU" term="%22Grimwood+J%22">Grimwood J</searchLink>; Hudson-Alpha Institute for Biotechnology, Huntsville, 35806, AL, USA.<br /><searchLink fieldCode="AU" term="%22Edwards+D%22">Edwards D</searchLink>; School of Biological Sciences, The University of Western Australia, Crawley, 6009, WA, Australia.<br /><searchLink fieldCode="AU" term="%22Nguyen+HT%22">Nguyen HT</searchLink>; Division of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri, Columbia, 65211, MO, USA.
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  Data: <searchLink fieldCode="JN" term="%229207397%22">The Plant journal : for cell and molecular biology</searchLink> [Plant J] 2019 Dec; Vol. 100 (5), pp. 1066-1082. <i>Date of Electronic Publication: </i>2019 Oct 28.
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