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Effect of sequence depth and length in long-read assembly of the maize inbred NC358.

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Title: Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
Authors: Ou S; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Liu J; Department of Genetics, University of Georgia, Athens, Georgia, 30602, USA., Chougule KM; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA., Fungtammasan A; DNAnexus, Inc., Mountain View, San Francisco, California, 94040, USA., Seetharam AS; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA.; Genome Informatics Facility, Iowa State University, Ames, Iowa, 50011, USA., Stein JC; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA., Llaca V; Genomics Technologies, Applied Science and Technology, Corteva Agriscience TM, Johnston, Iowa, 50131, USA., Manchanda N; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Gilbert AM; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, 55108, USA., Wei S; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA., Chin CS; DNAnexus, Inc., Mountain View, San Francisco, California, 94040, USA., Hufnagel DE; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Pedersen S; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Snodgrass SJ; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Fengler K; Genomics Technologies, Applied Science and Technology, Corteva Agriscience TM, Johnston, Iowa, 50131, USA., Woodhouse M; USDA ARS Corn Insects and Crop Genetics Research Unit, Ames, Iowa, 50011, USA., Walenz BP; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA., Hannigan BT; DNAnexus, Inc., Mountain View, San Francisco, California, 94040, USA., Dawe RK; Department of Genetics, University of Georgia, Athens, Georgia, 30602, USA. kdawe@uga.edu., Hirsch CN; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, 55108, USA. cnhirsch@umn.edu., Hufford MB; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA. mhufford@iastate.edu., Ware D; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA. ware@cshl.edu.; USDA ARS Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, New York, 14853, USA. ware@cshl.edu.
Source: Nature communications [Nat Commun] 2020 May 08; Vol. 11 (1), pp. 2288. Date of Electronic Publication: 2020 May 08.
Publication Type: Journal Article; Research Support, N.I.H., Intramural; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
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  Data: <searchLink fieldCode="AU" term="%22Ou+S%22">Ou S</searchLink>; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA.<br /><searchLink fieldCode="AU" term="%22Liu+J%22">Liu J</searchLink>; Department of Genetics, University of Georgia, Athens, Georgia, 30602, USA.<br /><searchLink fieldCode="AU" term="%22Chougule+KM%22">Chougule KM</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA.<br /><searchLink fieldCode="AU" term="%22Fungtammasan+A%22">Fungtammasan A</searchLink>; DNAnexus, Inc., Mountain View, San Francisco, California, 94040, USA.<br /><searchLink fieldCode="AU" term="%22Seetharam+AS%22">Seetharam AS</searchLink>; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA.; Genome Informatics Facility, Iowa State University, Ames, Iowa, 50011, USA.<br /><searchLink fieldCode="AU" term="%22Stein+JC%22">Stein JC</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA.<br /><searchLink fieldCode="AU" term="%22Llaca+V%22">Llaca V</searchLink>; Genomics Technologies, Applied Science and Technology, Corteva Agriscience TM, Johnston, Iowa, 50131, USA.<br /><searchLink fieldCode="AU" term="%22Manchanda+N%22">Manchanda N</searchLink>; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA.<br /><searchLink fieldCode="AU" term="%22Gilbert+AM%22">Gilbert AM</searchLink>; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, 55108, USA.<br /><searchLink fieldCode="AU" term="%22Wei+S%22">Wei S</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA.<br /><searchLink fieldCode="AU" term="%22Chin+CS%22">Chin CS</searchLink>; DNAnexus, Inc., Mountain View, San Francisco, California, 94040, USA.<br /><searchLink fieldCode="AU" term="%22Hufnagel+DE%22">Hufnagel DE</searchLink>; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA.<br /><searchLink fieldCode="AU" term="%22Pedersen+S%22">Pedersen S</searchLink>; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA.<br /><searchLink fieldCode="AU" term="%22Snodgrass+SJ%22">Snodgrass SJ</searchLink>; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA.<br /><searchLink fieldCode="AU" term="%22Fengler+K%22">Fengler K</searchLink>; Genomics Technologies, Applied Science and Technology, Corteva Agriscience TM, Johnston, Iowa, 50131, USA.<br /><searchLink fieldCode="AU" term="%22Woodhouse+M%22">Woodhouse M</searchLink>; USDA ARS Corn Insects and Crop Genetics Research Unit, Ames, Iowa, 50011, USA.<br /><searchLink fieldCode="AU" term="%22Walenz+BP%22">Walenz BP</searchLink>; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA.<br /><searchLink fieldCode="AU" term="%22Koren+S%22">Koren S</searchLink>; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA.<br /><searchLink fieldCode="AU" term="%22Phillippy+AM%22">Phillippy AM</searchLink>; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA.<br /><searchLink fieldCode="AU" term="%22Hannigan+BT%22">Hannigan BT</searchLink>; DNAnexus, Inc., Mountain View, San Francisco, California, 94040, USA.<br /><searchLink fieldCode="AU" term="%22Dawe+RK%22">Dawe RK</searchLink>; Department of Genetics, University of Georgia, Athens, Georgia, 30602, USA. kdawe@uga.edu.<br /><searchLink fieldCode="AU" term="%22Hirsch+CN%22">Hirsch CN</searchLink>; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, 55108, USA. cnhirsch@umn.edu.<br /><searchLink fieldCode="AU" term="%22Hufford+MB%22">Hufford MB</searchLink>; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA. mhufford@iastate.edu.<br /><searchLink fieldCode="AU" term="%22Ware+D%22">Ware D</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA. ware@cshl.edu.; USDA ARS Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, New York, 14853, USA. ware@cshl.edu.
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