A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice.

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Title: A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice.
Authors: Wierbowski SD; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853.; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Vo TV; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Falter-Braun P; Institute of Network Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764 Munich, Germany.; Microbe-Host Interactions, Faculty of Biology, Ludwig-Maximilians-Universität München, 80539 Munich, Germany., Jobe TO; Botanical Institute, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, 50674 Cologne, Germany., Kruse LH; Plant Biology Section, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853., Wei X; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853., Liang J; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Meyer MJ; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853.; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Akturk N; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Rivera-Erick CA; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Cordero NA; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Paramo MI; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853., Shayhidin EE; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Bertolotti M; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Tippens ND; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853.; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853., Akther K; Section of Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca, NY 14853-1901., Sharma R; School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi 110067, India., Katayose Y; Advanced Genomics Breeding Section, Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, Ibaraki 305-8634, Japan., Salehi-Ashtiani K; Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, 129188, Abu Dhabi, United Arab Emirates.; Center for Cancer Systems Biology, Dana-Farber Cancer Institute, Boston, MA 02215.; Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115.; Center for Genomics and Systems Biology, New York University Abu Dhabi, 129188, Abu Dhabi, United Arab Emirates., Hao T; Center for Cancer Systems Biology, Dana-Farber Cancer Institute, Boston, MA 02215.; Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115., Ronald PC; Department of Plant Pathology, University of California, Davis, CA 95616.; The Genome Center, University of California, Davis, CA 95616.; Innovative Genomics Institute, Berkeley, CA 94704., Ecker JR; Howard Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA 92037.; Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037., Schweitzer PA; BRC Genomics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY 14853., Kikuchi S; Plant Genome Research Unit, Division of Genome and Biodiversity Research, Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba 305-0856, Japan., Mizuno H; Department of Molecular Biology, National Institute of Agrobiological Resources, Tsukuba 305-0856, Japan., Hill DE; Center for Cancer Systems Biology, Dana-Farber Cancer Institute, Boston, MA 02215.; Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115., Vidal M; Center for Cancer Systems Biology, Dana-Farber Cancer Institute, Boston, MA 02215.; Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115., Moghe GD; Plant Biology Section, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853., McCouch SR; Section of Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca, NY 14853-1901; srm4@cornell.edu haiyuan.yu@cornell.edu., Yu H; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853; srm4@cornell.edu haiyuan.yu@cornell.edu.; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853.
Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2020 May 26; Vol. 117 (21), pp. 11836-11842. Date of Electronic Publication: 2020 May 12.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:1091-6490
DOI:10.1073/pnas.1918068117