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Supervised enhancer prediction with epigenetic pattern recognition and targeted validation.

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Title: Supervised enhancer prediction with epigenetic pattern recognition and targeted validation.
Authors: Sethi A; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Gu M; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Computer Science, Yale University, New Haven, CT, USA., Gumusgoz E; Department of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine, New Haven, CT, USA., Chan L; School of Medicine, The Chinese University of Hong Kong, Hong Kong, China., Yan KK; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Rozowsky J; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Barozzi I; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Afzal V; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Akiyama JA; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Plajzer-Frick I; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Yan C; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Novak CS; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Kato M; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Garvin TH; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Pham Q; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Harrington A; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Mannion BJ; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Lee EA; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Fukuda-Yuzawa Y; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Visel A; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Dickel DE; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Yip KY; Department of Computer Science, The Chinese University of Hong Kong, Hong Kong, China., Sutton R; Department of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine, New Haven, CT, USA., Pennacchio LA; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Gerstein M; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA. mark@gersteinlab.org.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA. mark@gersteinlab.org.; Department of Computer Science, Yale University, New Haven, CT, USA. mark@gersteinlab.org.
Source: Nature methods [Nat Methods] 2020 Aug; Vol. 17 (8), pp. 807-814. Date of Electronic Publication: 2020 Jul 29.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Sethi+A%22">Sethi A</searchLink>; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Gu+M%22">Gu M</searchLink>; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Computer Science, Yale University, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Gumusgoz+E%22">Gumusgoz E</searchLink>; Department of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Chan+L%22">Chan L</searchLink>; School of Medicine, The Chinese University of Hong Kong, Hong Kong, China.<br /><searchLink fieldCode="AU" term="%22Yan+KK%22">Yan KK</searchLink>; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Rozowsky+J%22">Rozowsky J</searchLink>; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Barozzi+I%22">Barozzi I</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Afzal+V%22">Afzal V</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Akiyama+JA%22">Akiyama JA</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Plajzer-Frick+I%22">Plajzer-Frick I</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Yan+C%22">Yan C</searchLink>; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Novak+CS%22">Novak CS</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Kato+M%22">Kato M</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Garvin+TH%22">Garvin TH</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Pham+Q%22">Pham Q</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Harrington+A%22">Harrington A</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Mannion+BJ%22">Mannion BJ</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Lee+EA%22">Lee EA</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Fukuda-Yuzawa+Y%22">Fukuda-Yuzawa Y</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Visel+A%22">Visel A</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Dickel+DE%22">Dickel DE</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Yip+KY%22">Yip KY</searchLink>; Department of Computer Science, The Chinese University of Hong Kong, Hong Kong, China.<br /><searchLink fieldCode="AU" term="%22Sutton+R%22">Sutton R</searchLink>; Department of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Pennacchio+LA%22">Pennacchio LA</searchLink>; Functional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Gerstein+M%22">Gerstein M</searchLink>; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA. mark@gersteinlab.org.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA. mark@gersteinlab.org.; Department of Computer Science, Yale University, New Haven, CT, USA. mark@gersteinlab.org.
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  Data: <searchLink fieldCode="JN" term="%22101215604%22">Nature methods</searchLink> [Nat Methods] 2020 Aug; Vol. 17 (8), pp. 807-814. <i>Date of Electronic Publication: </i>2020 Jul 29.
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