Framework for quality assessment of whole genome cancer sequences.
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| Title: | Framework for quality assessment of whole genome cancer sequences. |
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| Authors: | Whalley JP; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 4, 08028, Barcelona, Spain.; Wellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, UK., Buchhalter I; Division of Theoretical Bioinformatics (B080), German Cancer Research Centre (DKFZ), Heidelberg, Germany.; Department for Bioinformatics and Functional Genomics, Institute for Pharmacy and Molecular Biotechnology (IPMB) and BioQuant, Heidelberg University, Heidelberg, Germany.; Omics IT and Data Management Core Facility (W610), German Cancer Research Center (DKFZ), Heidelberg, Germany.; Division of Applied Bioinformatics (G200), Cancer Research Centre (DKFZ), Heidelberg, Germany., Rheinbay E; Broad Institute of Harvard and MIT, Cambridge, MA, USA.; Massachusetts General Hospital Cancer Center and Department of Pathology, Boston, MA, USA., Raine KM; Wellcome Sanger Institute, Hinxton, UK., Stobbe MD; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 4, 08028, Barcelona, Spain., Kleinheinz K; Division of Theoretical Bioinformatics (B080), German Cancer Research Centre (DKFZ), Heidelberg, Germany., Werner J; Division of Theoretical Bioinformatics (B080), German Cancer Research Centre (DKFZ), Heidelberg, Germany.; Department of Biological Oceanography, Leibniz Institute of Baltic Sea Research, Seestraße 15, Rostock, Germany., Beltran S; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 4, 08028, Barcelona, Spain., Gut M; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 4, 08028, Barcelona, Spain., Hübschmann D; Division of Theoretical Bioinformatics (B080), German Cancer Research Centre (DKFZ), Heidelberg, Germany.; Department for Bioinformatics and Functional Genomics, Institute for Pharmacy and Molecular Biotechnology (IPMB) and BioQuant, Heidelberg University, Heidelberg, Germany.; Department of Pediatric Immunology, Hematology and Oncology, University Hospital Heidelberg, Heidelberg, Germany.; Computational Oncology, Molecular Diagnostics Program, National Center for Tumor diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ), Heidelberg, Germany.; Heidelberg Insititute for Stem cell Technology and Experimental Medicine (HI-STEM), Heidelberg, Germany., Hutter B; Division of Applied Bioinformatics (G200), Cancer Research Centre (DKFZ), Heidelberg, Germany.; Computational Oncology, Molecular Diagnostics Program, National Center for Tumor diseases (NCT) Heidelberg and German Cancer Research Center (DKFZ), Heidelberg, Germany., Livitz D; Broad Institute of Harvard and MIT, Cambridge, MA, USA., Perry MD; Department of Radiation Oncology, University of California, San Francisco, CA, USA., Rosenberg M; Broad Institute of Harvard and MIT, Cambridge, MA, USA.; Massachusetts General Hospital Cancer Center and Department of Pathology, Boston, MA, USA., Saksena G; Broad Institute of Harvard and MIT, Cambridge, MA, USA., Trotta JR; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 4, 08028, Barcelona, Spain., Eils R; Center for Digital Health, Berlin Institute of Health (BIH) and Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin, Germany.; Health Data Science Unit, Heidelberg University Hospital and BioQuant, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany., Gerhard DS; Office of Cancer Genomics, National Cancer Institute, US National Institutes of Health, Bethesda, MD, USA., Campbell PJ; Wellcome Sanger Institute, Hinxton, UK., Schlesner M; Division of Theoretical Bioinformatics (B080), German Cancer Research Centre (DKFZ), Heidelberg, Germany.; Bioinformatics and Omics Data Analytics (B240), German Cancer Research Centre (DKFZ), Heidelberg, Germany., Gut IG; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 4, 08028, Barcelona, Spain. ivo.gut@cnag.crg.eu.; Universitat Pompeu Fabra (UPF), Barcelona, Spain. ivo.gut@cnag.crg.eu. |
| Source: | Nature communications [Nat Commun] 2020 Oct 07; Vol. 11 (1), pp. 5040. Date of Electronic Publication: 2020 Oct 07. |
| Publication Type: | Journal Article; Research Support, Non-U.S. Gov't |
| Journal Info: | Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 2041-1723 |
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| DOI: | 10.1038/s41467-020-18688-y |
