Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting.

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Title: Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting.
Authors: de Vries JJC; Clinical Microbiological Laboratory, department of Medical Microbiology, Leiden University Medical Center, Leiden, the Netherlands. Electronic address: jjcdevries@lumc.nl., Brown JR; Microbiology, Virology and Infection Prevention & Control, Great Ormond Street Hospital for Children NHS Foundation Trust, London, United Kingdom. Electronic address: julianne.brown@gosh.nhs.uk., Couto N; Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom. Electronic address: nmgdc20@bath.ac.uk., Beer M; Friedrich-Loeffler-Institute, Institute of Diagnostic Virology, Greifswald, Germany. Electronic address: martin.beer@fli.de., Le Mercier P; Swiss Institute of Bioinformatics, Geneva, Switzerland. Electronic address: Philippe.Lemercier@sib.swiss., Sidorov I; Clinical Microbiological Laboratory, department of Medical Microbiology, Leiden University Medical Center, Leiden, the Netherlands. Electronic address: I.A.Sidorov@lumc.nl., Papa A; Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Greece. Electronic address: annap@auth.gr., Fischer N; University Medical Center Hamburg-Eppendorf, UKE Institute for Medical Microbiology, Virology and Hygiene, Germany. Electronic address: nfischer@uke.de., Oude Munnink BB; Viroscience, Erasmus Medical Center, Rotterdam, the Netherlands. Electronic address: b.oudemunnink@erasmusmc.nl., Rodriquez C; Department of Virology, University hospital Henri Mondor, Assistance Public des Hopitaux de Paris, Créteil, France. Electronic address: christophe.rodriguez@aphp.fr., Zaheri M; Institute of Medical Virology, University of Zurich, Switzerland. Electronic address: zaheri.maryam@virology.uzh.ch., Sayiner A; Dokuz Eylul University, Medical Faculty, Department of Medical Microbiology, Izmir, Turkey. Electronic address: arzu.sayiner@deu.edu.tr., Hönemann M; Institute of Virology, Leipzig University, Leipzig, Germany. Electronic address: Mario.Hoenemann@medizin.uni-leipzig.de., Cataluna AP; Department of Preservation and Food Safety Technologies, IATA-CSIC, Paterna, Valencia, Spain. Electronic address: alba.perez@iata.csic.es., Carbo EC; Clinical Microbiological Laboratory, department of Medical Microbiology, Leiden University Medical Center, Leiden, the Netherlands. Electronic address: E.C.Carbo@lumc.nl., Bachofen C; Institute of Virology, University of Zurich, Switzerland. Electronic address: claudia.bachofen@uzh.ch., Kubacki J; Institute of Virology, University of Zurich, Switzerland. Electronic address: jakub.kubacki@uzh.ch., Schmitz D; RIVM National Institute for Public Health and Environment, Bilthoven, the Netherlands. Electronic address: Dennis.Schmitz@RIVM.nl., Tsioka K; Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Greece. Electronic address: aik.tsioka@gmail.com., Matamoros S; Medical Microbiology and Infection Control, Amsterdam UMC, Amsterdam, the Netherlands. Electronic address: s.p.matamoros@amsterdamumc.nl., Höper D; Friedrich-Loeffler-Institute, Institute of Diagnostic Virology, Greifswald, Germany. Electronic address: dirk.hoeper@fli.de., Hernandez M; Laboratory of Molecular Biology and Microbiology, Instituto Tecnologico Agrario de Castilla y Leon, Valladolid, Spain. Electronic address: hernandez.marta@gmail.com., Puchhammer-Stöckl E; Center of Virology, Medical University Vienna, Vienna, Austria. Electronic address: elisabeth.puchhammer@meduniwien.ac.at., Lebrand A; Swiss Institute of Bioinformatics, Geneva, Switzerland. Electronic address: aitana.lebrand@sib.swiss., Huber M; Institute of Medical Virology, University of Zurich, Switzerland. Electronic address: huber.michael@virology.uzh.ch., Simmonds P; Nuffield Department of Medicine, University of Oxford, Oxford, UK. Electronic address: peter.simmonds@ndm.ox.ac.uk., Claas ECJ; Clinical Microbiological Laboratory, department of Medical Microbiology, Leiden University Medical Center, Leiden, the Netherlands. Electronic address: E.C.J.Claas@lumc.nl., López-Labrador FX; Virology Laboratory, Genomics and Health Area, Centre for Public Health Research (FISABIO-Public Health), Valencia, Spain; Department of Microbiology, Medical School, University of Valencia, Spain; CIBERESP, Instituto de Salud Carlos III, Madrid, Spain. Electronic address: F.Xavier.Lopez@uv.es.
Corporate Authors: ESCV Network on Next-Generation Sequencing
Source: Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology [J Clin Virol] 2021 May; Vol. 138, pp. 104812. Date of Electronic Publication: 2021 Mar 26.
Publication Type: Journal Article
Journal Info: Publisher: Elsevier Science Country of Publication: Netherlands NLM ID: 9815671 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-5967 (Electronic) Linking ISSN: 13866532 NLM ISO Abbreviation: J Clin Virol Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:1873-5967
DOI:10.1016/j.jcv.2021.104812