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Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples.

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Title: Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples.
Authors: Zhang Y; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, 72079, USA., Blomquist TM; (Formerly) Department of Pathology, College of Medicine and Life Sciences, The University of Toledo, Toledo, OH, 43614, USA.; Lucas County Coroner's Office, 2595 Arlington Ave, Toledo, OH, 43614, USA., Kusko R; Immuneering Corporation, 245 Main St, Cambridge, MA, 02142, USA., Stetson D; Astrazeneca Pharmaceuticals, 35 Gatehouse Dr, Waltham, MA, 02451, USA., Zhang Z; Research and Development, Burning Rock Biotech, Shanghai, 201114, China., Yin L; (Formerly) Pathology and Laboratory Medicine Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA., Sebra R; Icahn Institute and Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai, 1425 Madison Ave, New York, NY, 10029, USA., Gong B; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, 72079, USA., Lococo JS; Illumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA., Mittal VK; Thermo Fisher Scientific, 110 Miller Ave, Ann Arbor, MI, 48104, USA., Novoradovskaya N; Agilent Technologies, 11011 N Torrey Pines Rd, La Jolla, CA, 92037, USA., Yeo JY; Department of Pathology, University of Toledo, 3000 Arlington Ave, Toledo, OH, 43614, USA., Dominiak N; Department of Pathology, University of Toledo, 3000 Arlington Ave, Toledo, OH, 43614, USA., Hipp J; Department of Pathology, Strata Oncology, Inc., Ann Arbor, MI, 48103, USA., Raymond A; Astrazeneca Pharmaceuticals, 35 Gatehouse Dr, Waltham, MA, 02451, USA., Qiu F; Research and Development, Burning Rock Biotech, Shanghai, 201114, China., Arib H; Icahn Institute and Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai, 1425 Madison Ave, New York, NY, 10029, USA., Smith ML; Icahn Institute and Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai, 1425 Madison Ave, New York, NY, 10029, USA., Brock JE; Pathology and Laboratory Medicine Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA., Farkas DH; Pathology and Laboratory Medicine Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA., Craig DJ; Department of Medicine, College of Medicine and Life Sciences, The University of Toledo, Toledo, OH, 43614, USA., Crawford EL; Department of Medicine, College of Medicine and Life Sciences, The University of Toledo, Toledo, OH, 43614, USA., Li D; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, 72079, USA., Morrison T; Accugenomics, Inc., 1410 Commonwealth Drive, Suite 105, Wilmington, NC, 20403, USA., Tom N; Center of Molecular Medicine, Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic.; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081 HZ, Amsterdam, The Netherlands., Xiao W; Massachusetts General Hospital, Harvard Medical School, Boston, MA, 02114, USA.; Stanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, USA., Yang M; Department of Information Science, University of Arkansas at Little Rock, 2801 S. Univ. Ave, Little Rock, AR, 72204, USA., Mason CE; Department of Physiology and Biophysics, Weill Cornell Medicine, Cornell University, New York, NY, 10065, USA., Richmond TA; Market & Application Development Bioinformatics, Roche Sequencing Solutions Inc., 4300 Hacienda Dr, Pleasanton, CA, 94588, USA., Jones W; Q2 Solutions - EA Genomics, 5927 S Miami Blvd, Morrisville, NC, 27560, USA., Johann DJ Jr; Winthrop P Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, 4301 W Markham St, Little Rock, AR, 72205, USA., Shi L; State Key Laboratory of Genetic Engineering, School of Life Sciences and Shanghai Cancer Hospital/Cancer Institute, Fudan University, Shanghai, 200438, China.; Human Phenome Institute, Fudan University, Shanghai, 201203, China.; Fudan-Gospel Joint Research Center for Precision Medicine, Fudan University, Shanghai, 200438, China., Tong W; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, 72079, USA., Willey JC; Departments of Medicine, Pathology, and Cancer Biology, College of Medicine and Life Sciences, University of Toledo Health Sciences Campus, 3000 Arlington Ave, Toledo, OH, 43614, USA. james.willey2@utoledo.edu., Xu J; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, 72079, USA. joshua.xu@fda.hhs.gov.
Source: Genome biology [Genome Biol] 2022 Jun 29; Vol. 23 (1), pp. 141. Date of Electronic Publication: 2022 Jun 29.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples.
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