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OME-Zarr: a cloud-optimized bioimaging file format with international community support.

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Title: OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Authors: Moore J; German BioImaging-Gesellschaft für Mikroskopie und Bildanalyse e.V., Constance, Germany. josh@openmicroscopy.org., Basurto-Lozada D; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK., Besson S; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Bogovic J; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Bragantini J; Chan Zuckerberg Biohub, San Francisco, CA, USA., Brown EM; Allen Institute for Cell Science, Seattle, WA, USA., Burel JM; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Casas Moreno X; Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden., de Medeiros G; Friedrich Miescher Institute for Biomedical Imaging, Basel, Switzerland., Diel EE; Glencoe Software Inc., Seattle, WA, USA., Gault D; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Ghosh SS; Massachusetts Institute of Technology, Cambridge, MA, USA., Gold I; Harvard Medical School, Boston, MA, USA., Halchenko YO; Dartmouth College, Hanover, NH, USA., Hartley M; European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Cambridge, UK., Horsfall D; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK., Keller MS; Harvard Medical School, Boston, MA, USA., Kittisopikul M; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Kovacs G; Allen Institute for Neural Dynamics, Seattle, WA, USA., Küpcü Yoldaş A; European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Cambridge, UK., Kyoda K; RIKEN Center for Biosystems Dynamics Research, Kobe, Japan., le Tournoulx de la Villegeorges A; scalable minds GmbH, Potsdam, Germany., Li T; Wellcome Sanger Institute, Hinxton, UK., Liberali P; Friedrich Miescher Institute for Biomedical Imaging, Basel, Switzerland., Lindner D; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Linkert M; Glencoe Software Inc., Seattle, WA, USA., Lüthi J; Friedrich Miescher Institute for Biomedical Imaging, Basel, Switzerland., Maitin-Shepard J; Google Research, Mountain View, CA, USA., Manz T; Harvard Medical School, Boston, MA, USA., Marconato L; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., McCormick M; Kitware, Inc, Carrboro, NC, USA., Lange M; Chan Zuckerberg Biohub, San Francisco, CA, USA., Mohamed K; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Moore W; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Norlin N; Department of Experimental Medical Science & Lund Bioimaging Centre, Lund University, Lund, Sweden., Ouyang W; Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden., Özdemir B; Euro-BioImaging Bio-Hub, EMBL, Heidelberg, Germany., Palla G; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany., Pape C; Georg-August-Universität Göttingen, Göttingen, Germany., Pelkmans L; University of Zürich, Zürich, Switzerland., Pietzsch T; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Preibisch S; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Prete M; Wellcome Sanger Institute, Hinxton, UK., Rzepka N; scalable minds GmbH, Potsdam, Germany., Samee S; Axle Research and Technology, Rockville, USA., Schaub N; Information Technology Branch, National Center for Advancing Translational Science, National Institutes of Health, Bethesda, USA., Sidky H; Axle Research and Technology, Rockville, USA., Solak AC; Chan Zuckerberg Biohub, San Francisco, CA, USA., Stirling DR; Glencoe Software Inc., Seattle, WA, USA., Striebel J; scalable minds GmbH, Potsdam, Germany., Tischer C; EMBL, Heidelberg, Germany., Toloudis D; Allen Institute for Cell Science, Seattle, WA, USA., Virshup I; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany., Walczysko P; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Watson AM; University of Pittsburgh, Pittsburgh, PA, USA., Weisbart E; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Wong F; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Yamauchi KA; Department of Biosystems Science and Engineering, ETH Zürich, Zürich, Switzerland., Bayraktar O; Wellcome Sanger Institute, Hinxton, UK., Cimini BA; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Gehlenborg N; Harvard Medical School, Boston, MA, USA., Haniffa M; Wellcome Sanger Institute, Hinxton, UK., Hotaling N; Information Technology Branch, National Center for Advancing Translational Science, National Institutes of Health, Bethesda, USA., Onami S; RIKEN Center for Biosystems Dynamics Research, Kobe, Japan., Royer LA; Chan Zuckerberg Biohub, San Francisco, CA, USA., Saalfeld S; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Stegle O; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Theis FJ; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany., Swedlow JR; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK.
Source: Histochemistry and cell biology [Histochem Cell Biol] 2023 Sep; Vol. 160 (3), pp. 223-251. Date of Electronic Publication: 2023 Jul 10.
Publication Type: Journal Article
Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 9506663 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-119X (Electronic) Linking ISSN: 09486143 NLM ISO Abbreviation: Histochem Cell Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
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Description
ISSN:1432-119X
DOI:10.1007/s00418-023-02209-1