IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data.

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Title: IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data.
Authors: Peres A; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel., Lees WD; Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, WC1E 7JE, UK., Rodriguez OL; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, 40202, USA., Lee NY; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, 06511, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA., Polak P; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel., Hope R; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel., Kedmi M; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA.; Division of Hematology and Bone Marrow Transplantation, Chaim Sheba Medical Center, Tel-Hashomer, 5262000, Israel.; Sackler School of Medicine, Tel-Aviv University, Tel-Aviv, 69978, Israel., Collins AM; School of Biotechnology and Biomedical Sciences, University of New South Wales, Sydney, NSW 2052, Australia., Ohlin M; Department of Immunotechnology Lund University, Lund, 221 00, Sweden., Kleinstein SH; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, 06511, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA., Watson CT; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, 40202, USA., Yaari G; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel.
Source: Nucleic acids research [Nucleic Acids Res] 2023 Sep 08; Vol. 51 (16), pp. e86.
Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
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  Data: IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data.
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  Data: <searchLink fieldCode="AU" term="%22Peres+A%22">Peres A</searchLink>; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel.<br /><searchLink fieldCode="AU" term="%22Lees+WD%22">Lees WD</searchLink>; Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, WC1E 7JE, UK.<br /><searchLink fieldCode="AU" term="%22Rodriguez+OL%22">Rodriguez OL</searchLink>; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, 40202, USA.<br /><searchLink fieldCode="AU" term="%22Lee+NY%22">Lee NY</searchLink>; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, 06511, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA.<br /><searchLink fieldCode="AU" term="%22Polak+P%22">Polak P</searchLink>; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel.<br /><searchLink fieldCode="AU" term="%22Hope+R%22">Hope R</searchLink>; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.<br /><searchLink fieldCode="AU" term="%22Kedmi+M%22">Kedmi M</searchLink>; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA.; Division of Hematology and Bone Marrow Transplantation, Chaim Sheba Medical Center, Tel-Hashomer, 5262000, Israel.; Sackler School of Medicine, Tel-Aviv University, Tel-Aviv, 69978, Israel.<br /><searchLink fieldCode="AU" term="%22Collins+AM%22">Collins AM</searchLink>; School of Biotechnology and Biomedical Sciences, University of New South Wales, Sydney, NSW 2052, Australia.<br /><searchLink fieldCode="AU" term="%22Ohlin+M%22">Ohlin M</searchLink>; Department of Immunotechnology Lund University, Lund, 221 00, Sweden.<br /><searchLink fieldCode="AU" term="%22Kleinstein+SH%22">Kleinstein SH</searchLink>; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, 06511, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA.<br /><searchLink fieldCode="AU" term="%22Watson+CT%22">Watson CT</searchLink>; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, 40202, USA.<br /><searchLink fieldCode="AU" term="%22Yaari+G%22">Yaari G</searchLink>; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel.
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        Value: 10.1093/nar/gkad603
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              Text: 2023 Sep 08
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