IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data.
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| Title: | IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data. |
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| Authors: | Peres A; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel., Lees WD; Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, WC1E 7JE, UK., Rodriguez OL; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, 40202, USA., Lee NY; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, 06511, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA., Polak P; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel., Hope R; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel., Kedmi M; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA.; Division of Hematology and Bone Marrow Transplantation, Chaim Sheba Medical Center, Tel-Hashomer, 5262000, Israel.; Sackler School of Medicine, Tel-Aviv University, Tel-Aviv, 69978, Israel., Collins AM; School of Biotechnology and Biomedical Sciences, University of New South Wales, Sydney, NSW 2052, Australia., Ohlin M; Department of Immunotechnology Lund University, Lund, 221 00, Sweden., Kleinstein SH; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, 06511, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA., Watson CT; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, 40202, USA., Yaari G; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel. |
| Source: | Nucleic acids research [Nucleic Acids Res] 2023 Sep 08; Vol. 51 (16), pp. e86. |
| Publication Type: | Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't |
| Journal Info: | Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
| FullText | Links: – Type: pdflink Text: Availability: 0 |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 37548401 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Peres+A%22">Peres A</searchLink>; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel.<br /><searchLink fieldCode="AU" term="%22Lees+WD%22">Lees WD</searchLink>; Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, WC1E 7JE, UK.<br /><searchLink fieldCode="AU" term="%22Rodriguez+OL%22">Rodriguez OL</searchLink>; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, 40202, USA.<br /><searchLink fieldCode="AU" term="%22Lee+NY%22">Lee NY</searchLink>; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, 06511, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA.<br /><searchLink fieldCode="AU" term="%22Polak+P%22">Polak P</searchLink>; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel.<br /><searchLink fieldCode="AU" term="%22Hope+R%22">Hope R</searchLink>; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.<br /><searchLink fieldCode="AU" term="%22Kedmi+M%22">Kedmi M</searchLink>; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA.; Division of Hematology and Bone Marrow Transplantation, Chaim Sheba Medical Center, Tel-Hashomer, 5262000, Israel.; Sackler School of Medicine, Tel-Aviv University, Tel-Aviv, 69978, Israel.<br /><searchLink fieldCode="AU" term="%22Collins+AM%22">Collins AM</searchLink>; School of Biotechnology and Biomedical Sciences, University of New South Wales, Sydney, NSW 2052, Australia.<br /><searchLink fieldCode="AU" term="%22Ohlin+M%22">Ohlin M</searchLink>; Department of Immunotechnology Lund University, Lund, 221 00, Sweden.<br /><searchLink fieldCode="AU" term="%22Kleinstein+SH%22">Kleinstein SH</searchLink>; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, 06511, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA.<br /><searchLink fieldCode="AU" term="%22Watson+CT%22">Watson CT</searchLink>; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, 40202, USA.<br /><searchLink fieldCode="AU" term="%22Yaari+G%22">Yaari G</searchLink>; Faculty of Engineering, Bar Ilan University, 5290002 Ramat Gan, Israel.; Bar Ilan Institute of Nanotechnology and Advanced Materials, Bar Ilan University, 5290002 Ramat Gan, Israel. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%220411011%22">Nucleic acids research</searchLink> [Nucleic Acids Res] 2023 Sep 08; Vol. 51 (16), pp. e86. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Oxford+University+Press%22">Oxford University Press </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>0411011 <i>Publication Model: </i>Print <i>Cited Medium: </i>Internet <i>ISSN: </i>1362-4962 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2203051048%22">03051048 </searchLink><i>NLM ISO Abbreviation: </i>Nucleic Acids Res <i>Subsets: </i>MEDLINE |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=37548401 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1093/nar/gkad603 Languages: – Code: eng Text: English PhysicalDescription: Pagination: StartPage: e86 Titles: – TitleFull: IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Peres A – PersonEntity: Name: NameFull: Lees WD – PersonEntity: Name: NameFull: Rodriguez OL – PersonEntity: Name: NameFull: Lee NY – PersonEntity: Name: NameFull: Polak P – PersonEntity: Name: NameFull: Hope R – PersonEntity: Name: NameFull: Kedmi M – PersonEntity: Name: NameFull: Collins AM – PersonEntity: Name: NameFull: Ohlin M – PersonEntity: Name: NameFull: Kleinstein SH – PersonEntity: Name: NameFull: Watson CT – PersonEntity: Name: NameFull: Yaari G IsPartOfRelationships: – BibEntity: Dates: – D: 08 M: 09 Text: 2023 Sep 08 Type: published Y: 2023 Identifiers: – Type: issn-electronic Value: 1362-4962 Numbering: – Type: volume Value: 51 – Type: issue Value: 16 Titles: – TitleFull: Nucleic acids research Type: main |
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