Phased nanopore assembly with Shasta and modular graph phasing with GFAse.

Saved in:
Bibliographic Details
Title: Phased nanopore assembly with Shasta and modular graph phasing with GFAse.
Authors: Lorig-Roach R; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA; rlorigro@ucsc.edu pacarnev@ucsc.edu bpaten@ucsc.edu., Meredith M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Monlong J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Jain M; Department of Bioengineering, Department of Physics, Northeastern University, Boston, Massachusetts 02120, USA., Olsen HE; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., McNulty B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA., Montague TG; The Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Neuroscience, Columbia University, New York, New York 10027, USA.; Howard Hughes Medical Institute, Columbia University, New York, New York 10032, USA., Lucas JK; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Condon C; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Eizenga JM; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Juul S; Oxford Nanopore Technologies Incorporated, New York, New York 10013, USA., McKenzie SK; Oxford Nanopore Technologies Incorporated, New York, New York 10013, USA., Simmonds SE; Chan Zuckerberg Initiative Foundation, Redwood City, California 94063, USA., Park J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Asri M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20894, USA., Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA., Axel R; The Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Neuroscience, Columbia University, New York, New York 10027, USA.; Howard Hughes Medical Institute, Columbia University, New York, New York 10032, USA., Martin B; Chan Zuckerberg Initiative Foundation, Redwood City, California 94063, USA., Carnevali P; Chan Zuckerberg Initiative Foundation, Redwood City, California 94063, USA; rlorigro@ucsc.edu pacarnev@ucsc.edu bpaten@ucsc.edu., Miga KH; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Paten B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA; rlorigro@ucsc.edu pacarnev@ucsc.edu bpaten@ucsc.edu.
Source: Genome research [Genome Res] 2024 Apr 25; Vol. 34 (3), pp. 454-468. Date of Electronic Publication: 2024 Apr 25.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:1549-5469
DOI:10.1101/gr.278268.123