Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.

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Title: Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.
Authors: Thorpe HA; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway. Electronic address: harry.thorpe@medisin.uio.no., Pesonen M; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., Corbella M; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Pesonen H; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., Gaiarsa S; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Boinett CJ; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Tonkin-Hill G; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Mäklin T; Department of Computer Science, University of Helsinki, Helsinki, Finland., Pöntinen AK; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., MacAlasdair N; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Gladstone RA; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., Arredondo-Alonso S; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., Kallonen T; Institute of Biomedicine, University of Turku, Turku, Finland., Jamrozy D; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Lo SW; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Chaguza C; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Blackwell GA; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Honkela A; Department of Computer Science, University of Helsinki, Helsinki, Finland., Schürch AC; Department of Medical Microbiology, Universitair Medisch Centrum Utrecht, Utrecht, Netherlands., Willems RJL; Department of Medical Microbiology, Universitair Medisch Centrum Utrecht, Utrecht, Netherlands., Merla C; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Petazzoni G; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy; Department of Medical, Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy., Feil EJ; Milner Centre for Evolution, University of Bath, Claverton Down, Bath, UK., Cambieri P; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Thomson NR; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Bentley SD; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Sassera D; Department of Biology and Biotechnology, University of Pavia, Pavia, Italy; Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Corander J; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK; Helsinki Institute for Information Technology, Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland. Electronic address: jukka.corander@medisin.uio.no.
Source: The Lancet. Microbe [Lancet Microbe] 2024 Oct; Vol. 5 (10), pp. 100890. Date of Electronic Publication: 2024 Aug 20.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101769019 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-5247 (Electronic) Linking ISSN: 26665247 NLM ISO Abbreviation: Lancet Microbe Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:2666-5247
DOI:10.1016/S2666-5247(24)00113-7