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Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.

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Title: Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.
Authors: Thorpe HA; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway. Electronic address: harry.thorpe@medisin.uio.no., Pesonen M; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., Corbella M; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Pesonen H; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., Gaiarsa S; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Boinett CJ; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Tonkin-Hill G; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Mäklin T; Department of Computer Science, University of Helsinki, Helsinki, Finland., Pöntinen AK; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., MacAlasdair N; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Gladstone RA; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., Arredondo-Alonso S; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway., Kallonen T; Institute of Biomedicine, University of Turku, Turku, Finland., Jamrozy D; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Lo SW; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Chaguza C; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Blackwell GA; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Honkela A; Department of Computer Science, University of Helsinki, Helsinki, Finland., Schürch AC; Department of Medical Microbiology, Universitair Medisch Centrum Utrecht, Utrecht, Netherlands., Willems RJL; Department of Medical Microbiology, Universitair Medisch Centrum Utrecht, Utrecht, Netherlands., Merla C; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Petazzoni G; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy; Department of Medical, Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy., Feil EJ; Milner Centre for Evolution, University of Bath, Claverton Down, Bath, UK., Cambieri P; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Thomson NR; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Bentley SD; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK., Sassera D; Department of Biology and Biotechnology, University of Pavia, Pavia, Italy; Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Corander J; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK; Helsinki Institute for Information Technology, Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland. Electronic address: jukka.corander@medisin.uio.no.
Source: The Lancet. Microbe [Lancet Microbe] 2024 Oct; Vol. 5 (10), pp. 100890. Date of Electronic Publication: 2024 Aug 20.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101769019 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-5247 (Electronic) Linking ISSN: 26665247 NLM ISO Abbreviation: Lancet Microbe Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.
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  Data: <searchLink fieldCode="AU" term="%22Thorpe+HA%22">Thorpe HA</searchLink>; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway. Electronic address: harry.thorpe@medisin.uio.no.<br /><searchLink fieldCode="AU" term="%22Pesonen+M%22">Pesonen M</searchLink>; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway.<br /><searchLink fieldCode="AU" term="%22Corbella+M%22">Corbella M</searchLink>; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.<br /><searchLink fieldCode="AU" term="%22Pesonen+H%22">Pesonen H</searchLink>; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway.<br /><searchLink fieldCode="AU" term="%22Gaiarsa+S%22">Gaiarsa S</searchLink>; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.<br /><searchLink fieldCode="AU" term="%22Boinett+CJ%22">Boinett CJ</searchLink>; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Tonkin-Hill+G%22">Tonkin-Hill G</searchLink>; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Mäklin+T%22">Mäklin T</searchLink>; Department of Computer Science, University of Helsinki, Helsinki, Finland.<br /><searchLink fieldCode="AU" term="%22Pöntinen+AK%22">Pöntinen AK</searchLink>; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway.<br /><searchLink fieldCode="AU" term="%22MacAlasdair+N%22">MacAlasdair N</searchLink>; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Gladstone+RA%22">Gladstone RA</searchLink>; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway.<br /><searchLink fieldCode="AU" term="%22Arredondo-Alonso+S%22">Arredondo-Alonso S</searchLink>; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway.<br /><searchLink fieldCode="AU" term="%22Kallonen+T%22">Kallonen T</searchLink>; Institute of Biomedicine, University of Turku, Turku, Finland.<br /><searchLink fieldCode="AU" term="%22Jamrozy+D%22">Jamrozy D</searchLink>; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Lo+SW%22">Lo SW</searchLink>; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Chaguza+C%22">Chaguza C</searchLink>; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Blackwell+GA%22">Blackwell GA</searchLink>; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Honkela+A%22">Honkela A</searchLink>; Department of Computer Science, University of Helsinki, Helsinki, Finland.<br /><searchLink fieldCode="AU" term="%22Schürch+AC%22">Schürch AC</searchLink>; Department of Medical Microbiology, Universitair Medisch Centrum Utrecht, Utrecht, Netherlands.<br /><searchLink fieldCode="AU" term="%22Willems+RJL%22">Willems RJL</searchLink>; Department of Medical Microbiology, Universitair Medisch Centrum Utrecht, Utrecht, Netherlands.<br /><searchLink fieldCode="AU" term="%22Merla+C%22">Merla C</searchLink>; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.<br /><searchLink fieldCode="AU" term="%22Petazzoni+G%22">Petazzoni G</searchLink>; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy; Department of Medical, Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy.<br /><searchLink fieldCode="AU" term="%22Feil+EJ%22">Feil EJ</searchLink>; Milner Centre for Evolution, University of Bath, Claverton Down, Bath, UK.<br /><searchLink fieldCode="AU" term="%22Cambieri+P%22">Cambieri P</searchLink>; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.<br /><searchLink fieldCode="AU" term="%22Thomson+NR%22">Thomson NR</searchLink>; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Bentley+SD%22">Bentley SD</searchLink>; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Sassera+D%22">Sassera D</searchLink>; Department of Biology and Biotechnology, University of Pavia, Pavia, Italy; Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.<br /><searchLink fieldCode="AU" term="%22Corander+J%22">Corander J</searchLink>; Department of Biostatistics, Faculty of Medicine, University of Oslo, Oslo, Norway; Parasites and Microbes, Wellcome Sanger Institute, Cambridge, UK; Helsinki Institute for Information Technology, Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland. Electronic address: jukka.corander@medisin.uio.no.
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  Data: <searchLink fieldCode="JN" term="%22101769019%22">The Lancet. Microbe</searchLink> [Lancet Microbe] 2024 Oct; Vol. 5 (10), pp. 100890. <i>Date of Electronic Publication: </i>2024 Aug 20.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Elsevier+Ltd%22">Elsevier Ltd </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>101769019 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2666-5247 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2226665247%22">26665247 </searchLink><i>NLM ISO Abbreviation: </i>Lancet Microbe <i>Subsets: </i>MEDLINE
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