Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex.

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Title: Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex.
Authors: Johansen NJ; Allen Institute for Brain Science, Seattle, WA 98109.; These authors contributed equally., Kempynck N; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium.; These authors contributed equally., Zemke NR; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093., Somasundaram S; Allen Institute for Brain Science, Seattle, WA 98109., De Winter S; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Hooper M; Allen Institute for Brain Science, Seattle, WA 98109., Dwivedi D; Allen Institute for Brain Science, Seattle, WA 98109., Lohia R; Physiology Department and Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada., Wehbe F; Maisonneuve-Rosemont Hospital Research Centre, University of Montreal, Montreal, Quebec, Canada., Li B; School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China., Abaffyová D; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Armand EJ; Bioinformatics and Systems Biology Program, University of California, San Diego, La Jolla, CA 92093., De Man J; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Eksi EC; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Hecker N; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Hulselmans G; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Konstantakos V; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Mauduit D; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Mich JK; Allen Institute for Brain Science, Seattle, WA 98109., Partel G; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Daigle TL; Allen Institute for Brain Science, Seattle, WA 98109., Levi BP; Allen Institute for Brain Science, Seattle, WA 98109., Zhang K; School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China.; Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang, China., Tanaka Y; Maisonneuve-Rosemont Hospital Research Centre, University of Montreal, Montreal, Quebec, Canada., Gillis J; Physiology Department and Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada., Ting JT; Allen Institute for Brain Science, Seattle, WA 98109.; Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195., Ben-Simon Y; Allen Institute for Brain Science, Seattle, WA 98109., Miller J; Allen Institute for Brain Science, Seattle, WA 98109., Ecker JR; Salk Institute for Biological Studies, La Jolla, CA 92037., Ren B; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093., Aerts S; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Lein ES; Allen Institute for Brain Science, Seattle, WA 98109., Tasic B; Allen Institute for Brain Science, Seattle, WA 98109., Bakken TE; Allen Institute for Brain Science, Seattle, WA 98109.; Lead contact.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Mar 25. Date of Electronic Publication: 2025 Mar 25.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:2692-8205
DOI:10.1101/2024.08.21.609075