An initial game-theoretic assessment of enhanced tissue preparation and imaging protocols for improved deep learning inference of spatial transcriptomics from tissue morphology.
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| Title: | An initial game-theoretic assessment of enhanced tissue preparation and imaging protocols for improved deep learning inference of spatial transcriptomics from tissue morphology. |
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| Authors: | Fatemi MY; Department of Computer Science, University of Virginia, Charlottesville, VA 22903, USA., Lu Y; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Diallo AB; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.; Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA., Srinivasan G; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Azher ZL; Thomas Jefferson High School for Science and Technology, Alexandria, VA 22312, USA., Christensen BC; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA., Salas LA; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA., Tsongalis GJ; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Palisoul SM; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Perreard L; Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, NH 03756, USA., Kolling FW 4th; Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, NH 03756, USA., Vaickus LJ; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Levy JJ; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.; Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.; Department of Dermatology, Dartmouth Health, Lebanon, NH 03756, USA.; Department of Pathology and Laboratory Medicine, Cedars Sinai Medical Center, Los Angeles, CA 90048, USA.; Department of Computational Biomedicine, Cedars Sinai Medical Center, Los Angeles, CA 90048, USA. |
| Source: | Briefings in bioinformatics [Brief Bioinform] 2024 Sep 23; Vol. 25 (6). |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 1477-4054 |
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| DOI: | 10.1093/bib/bbae476 |
