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An initial game-theoretic assessment of enhanced tissue preparation and imaging protocols for improved deep learning inference of spatial transcriptomics from tissue morphology.

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Title: An initial game-theoretic assessment of enhanced tissue preparation and imaging protocols for improved deep learning inference of spatial transcriptomics from tissue morphology.
Authors: Fatemi MY; Department of Computer Science, University of Virginia, Charlottesville, VA 22903, USA., Lu Y; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Diallo AB; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.; Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA., Srinivasan G; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Azher ZL; Thomas Jefferson High School for Science and Technology, Alexandria, VA 22312, USA., Christensen BC; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA., Salas LA; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA., Tsongalis GJ; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Palisoul SM; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Perreard L; Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, NH 03756, USA., Kolling FW 4th; Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, NH 03756, USA., Vaickus LJ; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA., Levy JJ; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.; Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.; Department of Dermatology, Dartmouth Health, Lebanon, NH 03756, USA.; Department of Pathology and Laboratory Medicine, Cedars Sinai Medical Center, Los Angeles, CA 90048, USA.; Department of Computational Biomedicine, Cedars Sinai Medical Center, Los Angeles, CA 90048, USA.
Source: Briefings in bioinformatics [Brief Bioinform] 2024 Sep 23; Vol. 25 (6).
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Fatemi+MY%22">Fatemi MY</searchLink>; Department of Computer Science, University of Virginia, Charlottesville, VA 22903, USA.<br /><searchLink fieldCode="AU" term="%22Lu+Y%22">Lu Y</searchLink>; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.<br /><searchLink fieldCode="AU" term="%22Diallo+AB%22">Diallo AB</searchLink>; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.; Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.<br /><searchLink fieldCode="AU" term="%22Srinivasan+G%22">Srinivasan G</searchLink>; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.<br /><searchLink fieldCode="AU" term="%22Azher+ZL%22">Azher ZL</searchLink>; Thomas Jefferson High School for Science and Technology, Alexandria, VA 22312, USA.<br /><searchLink fieldCode="AU" term="%22Christensen+BC%22">Christensen BC</searchLink>; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.<br /><searchLink fieldCode="AU" term="%22Salas+LA%22">Salas LA</searchLink>; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.<br /><searchLink fieldCode="AU" term="%22Tsongalis+GJ%22">Tsongalis GJ</searchLink>; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.<br /><searchLink fieldCode="AU" term="%22Palisoul+SM%22">Palisoul SM</searchLink>; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.<br /><searchLink fieldCode="AU" term="%22Perreard+L%22">Perreard L</searchLink>; Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, NH 03756, USA.<br /><searchLink fieldCode="AU" term="%22Kolling+FW+4th%22">Kolling FW 4th</searchLink>; Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, NH 03756, USA.<br /><searchLink fieldCode="AU" term="%22Vaickus+LJ%22">Vaickus LJ</searchLink>; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.<br /><searchLink fieldCode="AU" term="%22Levy+JJ%22">Levy JJ</searchLink>; Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine, Dartmouth Health, Lebanon, NH 03766, USA.; Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.; Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH 03756, USA.; Department of Dermatology, Dartmouth Health, Lebanon, NH 03756, USA.; Department of Pathology and Laboratory Medicine, Cedars Sinai Medical Center, Los Angeles, CA 90048, USA.; Department of Computational Biomedicine, Cedars Sinai Medical Center, Los Angeles, CA 90048, USA.
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              Text: 2024 Sep 23
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