Comprehensive evaluation and practical guideline of gating methods for high-dimensional cytometry data: manual gating, unsupervised clustering, and auto-gating.
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| Title: | Comprehensive evaluation and practical guideline of gating methods for high-dimensional cytometry data: manual gating, unsupervised clustering, and auto-gating. |
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| Authors: | Liu P; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Pan Y; Department of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, 1400 Pressler St., Houston, TX 77030, US., Chang HC; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Wang W; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Fang Y; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Xue X; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Zou J; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Toothaker JM; Department of Immunology, University of Pittsburgh, 5051 Centre Avenue, Pittsburgh, PA 15213, US.; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US., Olaloye O; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US., Santiago EG; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US., McCourt B; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US., Mitsialis V; Department of Pediatrics, Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital and Department of Pediatrics, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US.; Department of Medicine, Division of Gastroenterology, Hepatology, and Endoscopy, Brigham & Women's Hospital and Department of Medicine, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US., Presicce P; Division of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California Los Angeles, 757 Westwood Plaza, Los Angeles, CA 90095, US., Kallapur SG; Division of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California Los Angeles, 757 Westwood Plaza, Los Angeles, CA 90095, US., Snapper SB; Department of Pediatrics, Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital and Department of Pediatrics, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US.; Department of Medicine, Division of Gastroenterology, Hepatology, and Endoscopy, Brigham & Women's Hospital and Department of Medicine, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US., Liu JJ; Drug Discovery Institute, School of Medicine, University of Pittsburgh, 700 Technology Dr, Pittsburgh, PA 15219, US.; Pittsburgh Liver Research Center, School of Medicine, University of Pittsburgh, 200 Lothrop Street, Pittsburgh, PA 15261, US., Tseng GC; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US.; Computational and Systems Biology, School of Medicine, University of Pittsburgh, 3420 Forbes Avenue, Pittsburgh, PA 15213, US., Konnikova L; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US.; Division of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California Los Angeles, 757 Westwood Plaza, Los Angeles, CA 90095, US.; Department of Obstetrics, Gynecology and Reproductive Sciences, Yale University, 333 Cedar Street, New Haven, CT 06510, US.; Department of Immunobiology, Yale University, 300 Cedar Street, New Haven, CT 06520, US.; Program in Human and Translational Immunology, Yale University, 300 Cedar Street, New Haven, CT 06520, US.; Program in Translational Biomedicine, Yale University, 300 Cedar Street, New Haven, CT 06520, US.; Center for Systems and Engineering Immunology, Yale University, 100 College St., New Haven, CT 06510, US., Liu S; Drug Discovery Institute, School of Medicine, University of Pittsburgh, 700 Technology Dr, Pittsburgh, PA 15219, US.; Pittsburgh Liver Research Center, School of Medicine, University of Pittsburgh, 200 Lothrop Street, Pittsburgh, PA 15261, US.; Computational and Systems Biology, School of Medicine, University of Pittsburgh, 3420 Forbes Avenue, Pittsburgh, PA 15213, US.; Department of Pharmacology and Chemical Biology, School of Medicine, University of Pittsburgh, 200 Lothrop St., Pittsburgh, PA 15261, US.; Hillman Cancer Center, University of Pittsburgh, 5150 Centre Ave., Pittsburgh, PA 15232, US. |
| Source: | Briefings in bioinformatics [Brief Bioinform] 2024 Nov 22; Vol. 26 (1). |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 1477-4054 |
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| DOI: | 10.1093/bib/bbae633 |
