The RMaP challenge of predicting RNA modifications by nanopore sequencing.
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| Title: | The RMaP challenge of predicting RNA modifications by nanopore sequencing. |
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| Authors: | Spangenberg J; RNA Bioinformatics, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany., Mündnich S; Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany., Busch A; Institute for Informatics, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany., Pastore S; Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany.; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany., Wierczeiko A; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany., Goettsch W; RNA Bioinformatics, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany.; Fritz Lipmann Institute-Leibniz Institute on Aging, 07745, Jena, Germany., Dietrich V; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany., Pryszcz LP; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain., Cruciani S; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain., Novoa EM; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain.; Universitat Pompeu Fabra, Barcelona, 08003, Spain.; ICREA, Pg Lluis Companys 23, Barcelona, 08010, Spain., Joshi K; Department of Neurosurgery, Oncology, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, 1650 Orleans St, Baltimore, MD, 21231, USA.; Johns Hopkins All Children's Hospital, 600 5th St. South, St.Petersburg, FL, 33701, USA., Perera R; Department of Neurosurgery, Oncology, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, 1650 Orleans St, Baltimore, MD, 21231, USA.; Johns Hopkins All Children's Hospital, 600 5th St. South, St.Petersburg, FL, 33701, USA., Di Giorgio S; Division of Immune Diversity, German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany., Arrubarrena P; Department of Mathematics at Imperial College London, London, SW7 2AZ, UK.; The Alan Turing Institute, London, NW1 2DB, UK., Tellioglu I; Division of Immune Diversity, German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.; Graduate Program of the Faculty of Biosciences, Heidelberg University, Heidelberg, 69120, Germany., Poon CL; Computational Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Wan YK; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, 138672, Republic of Singapore., Göke J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, 138672, Republic of Singapore.; Department of Statistics and Applied Probability, National University of Singapore, Singapore, Republic of Singapore., Hildebrandt A; Institute for Informatics, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany., Dieterich C; Klaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg, Im Neuenheimer Feld 669, 69120, Heidelberg, Germany. christoph.dieterich@uni-heidelberg.de., Helm M; Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany. mhelm@uni-mainz.de., Marz M; RNA Bioinformatics, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany. manja@uni-jena.de.; Fritz Lipmann Institute-Leibniz Institute on Aging, 07745, Jena, Germany. manja@uni-jena.de.; Balance of the Microverse, Fürstengraben 1, 07743, Jena, Germany. manja@uni-jena.de., Gerber S; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany. sugerber@uni-mainz.de.; Institute for Quantitative and Computational Biosciences (IQCB), Mainz, Germany. sugerber@uni-mainz.de., Alagna N; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany. nalagna@uni-mainz.de. |
| Source: | Communications chemistry [Commun Chem] 2025 Apr 12; Vol. 8 (1), pp. 115. Date of Electronic Publication: 2025 Apr 12. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: Springer Nature Country of Publication: England NLM ID: 101725670 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3669 (Electronic) Linking ISSN: 23993669 NLM ISO Abbreviation: Commun Chem Subsets: PubMed not MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 2399-3669 |
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| DOI: | 10.1038/s42004-025-01507-0 |
