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The RMaP challenge of predicting RNA modifications by nanopore sequencing.

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Title: The RMaP challenge of predicting RNA modifications by nanopore sequencing.
Authors: Spangenberg J; RNA Bioinformatics, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany., Mündnich S; Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany., Busch A; Institute for Informatics, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany., Pastore S; Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany.; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany., Wierczeiko A; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany., Goettsch W; RNA Bioinformatics, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany.; Fritz Lipmann Institute-Leibniz Institute on Aging, 07745, Jena, Germany., Dietrich V; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany., Pryszcz LP; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain., Cruciani S; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain., Novoa EM; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain.; Universitat Pompeu Fabra, Barcelona, 08003, Spain.; ICREA, Pg Lluis Companys 23, Barcelona, 08010, Spain., Joshi K; Department of Neurosurgery, Oncology, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, 1650 Orleans St, Baltimore, MD, 21231, USA.; Johns Hopkins All Children's Hospital, 600 5th St. South, St.Petersburg, FL, 33701, USA., Perera R; Department of Neurosurgery, Oncology, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, 1650 Orleans St, Baltimore, MD, 21231, USA.; Johns Hopkins All Children's Hospital, 600 5th St. South, St.Petersburg, FL, 33701, USA., Di Giorgio S; Division of Immune Diversity, German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany., Arrubarrena P; Department of Mathematics at Imperial College London, London, SW7 2AZ, UK.; The Alan Turing Institute, London, NW1 2DB, UK., Tellioglu I; Division of Immune Diversity, German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.; Graduate Program of the Faculty of Biosciences, Heidelberg University, Heidelberg, 69120, Germany., Poon CL; Computational Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Wan YK; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, 138672, Republic of Singapore., Göke J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, 138672, Republic of Singapore.; Department of Statistics and Applied Probability, National University of Singapore, Singapore, Republic of Singapore., Hildebrandt A; Institute for Informatics, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany., Dieterich C; Klaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg, Im Neuenheimer Feld 669, 69120, Heidelberg, Germany. christoph.dieterich@uni-heidelberg.de., Helm M; Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany. mhelm@uni-mainz.de., Marz M; RNA Bioinformatics, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany. manja@uni-jena.de.; Fritz Lipmann Institute-Leibniz Institute on Aging, 07745, Jena, Germany. manja@uni-jena.de.; Balance of the Microverse, Fürstengraben 1, 07743, Jena, Germany. manja@uni-jena.de., Gerber S; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany. sugerber@uni-mainz.de.; Institute for Quantitative and Computational Biosciences (IQCB), Mainz, Germany. sugerber@uni-mainz.de., Alagna N; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany. nalagna@uni-mainz.de.
Source: Communications chemistry [Commun Chem] 2025 Apr 12; Vol. 8 (1), pp. 115. Date of Electronic Publication: 2025 Apr 12.
Publication Type: Journal Article
Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101725670 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3669 (Electronic) Linking ISSN: 23993669 NLM ISO Abbreviation: Commun Chem Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: The RMaP challenge of predicting RNA modifications by nanopore sequencing.
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  Data: <searchLink fieldCode="AU" term="%22Spangenberg+J%22">Spangenberg J</searchLink>; RNA Bioinformatics, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany.<br /><searchLink fieldCode="AU" term="%22Mündnich+S%22">Mündnich S</searchLink>; Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany.<br /><searchLink fieldCode="AU" term="%22Busch+A%22">Busch A</searchLink>; Institute for Informatics, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany.<br /><searchLink fieldCode="AU" term="%22Pastore+S%22">Pastore S</searchLink>; Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany.; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany.<br /><searchLink fieldCode="AU" term="%22Wierczeiko+A%22">Wierczeiko A</searchLink>; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany.<br /><searchLink fieldCode="AU" term="%22Goettsch+W%22">Goettsch W</searchLink>; RNA Bioinformatics, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany.; Fritz Lipmann Institute-Leibniz Institute on Aging, 07745, Jena, Germany.<br /><searchLink fieldCode="AU" term="%22Dietrich+V%22">Dietrich V</searchLink>; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany.<br /><searchLink fieldCode="AU" term="%22Pryszcz+LP%22">Pryszcz LP</searchLink>; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain.<br /><searchLink fieldCode="AU" term="%22Cruciani+S%22">Cruciani S</searchLink>; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain.<br /><searchLink fieldCode="AU" term="%22Novoa+EM%22">Novoa EM</searchLink>; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain.; Universitat Pompeu Fabra, Barcelona, 08003, Spain.; ICREA, Pg Lluis Companys 23, Barcelona, 08010, Spain.<br /><searchLink fieldCode="AU" term="%22Joshi+K%22">Joshi K</searchLink>; Department of Neurosurgery, Oncology, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, 1650 Orleans St, Baltimore, MD, 21231, USA.; Johns Hopkins All Children's Hospital, 600 5th St. South, St.Petersburg, FL, 33701, USA.<br /><searchLink fieldCode="AU" term="%22Perera+R%22">Perera R</searchLink>; Department of Neurosurgery, Oncology, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, 1650 Orleans St, Baltimore, MD, 21231, USA.; Johns Hopkins All Children's Hospital, 600 5th St. South, St.Petersburg, FL, 33701, USA.<br /><searchLink fieldCode="AU" term="%22Di+Giorgio+S%22">Di Giorgio S</searchLink>; Division of Immune Diversity, German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Arrubarrena+P%22">Arrubarrena P</searchLink>; Department of Mathematics at Imperial College London, London, SW7 2AZ, UK.; The Alan Turing Institute, London, NW1 2DB, UK.<br /><searchLink fieldCode="AU" term="%22Tellioglu+I%22">Tellioglu I</searchLink>; Division of Immune Diversity, German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.; Graduate Program of the Faculty of Biosciences, Heidelberg University, Heidelberg, 69120, Germany.<br /><searchLink fieldCode="AU" term="%22Poon+CL%22">Poon CL</searchLink>; Computational Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Wan+YK%22">Wan YK</searchLink>; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, 138672, Republic of Singapore.<br /><searchLink fieldCode="AU" term="%22Göke+J%22">Göke J</searchLink>; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, 138672, Republic of Singapore.; Department of Statistics and Applied Probability, National University of Singapore, Singapore, Republic of Singapore.<br /><searchLink fieldCode="AU" term="%22Hildebrandt+A%22">Hildebrandt A</searchLink>; Institute for Informatics, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany.<br /><searchLink fieldCode="AU" term="%22Dieterich+C%22">Dieterich C</searchLink>; Klaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg, Im Neuenheimer Feld 669, 69120, Heidelberg, Germany. christoph.dieterich@uni-heidelberg.de.<br /><searchLink fieldCode="AU" term="%22Helm+M%22">Helm M</searchLink>; Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-University Mainz, 55128, Mainz, Germany. mhelm@uni-mainz.de.<br /><searchLink fieldCode="AU" term="%22Marz+M%22">Marz M</searchLink>; RNA Bioinformatics, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany. manja@uni-jena.de.; Fritz Lipmann Institute-Leibniz Institute on Aging, 07745, Jena, Germany. manja@uni-jena.de.; Balance of the Microverse, Fürstengraben 1, 07743, Jena, Germany. manja@uni-jena.de.<br /><searchLink fieldCode="AU" term="%22Gerber+S%22">Gerber S</searchLink>; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany. sugerber@uni-mainz.de.; Institute for Quantitative and Computational Biosciences (IQCB), Mainz, Germany. sugerber@uni-mainz.de.<br /><searchLink fieldCode="AU" term="%22Alagna+N%22">Alagna N</searchLink>; Institute for Human Genetics, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany. nalagna@uni-mainz.de.
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  Data: <searchLink fieldCode="JN" term="%22101725670%22">Communications chemistry</searchLink> [Commun Chem] 2025 Apr 12; Vol. 8 (1), pp. 115. <i>Date of Electronic Publication: </i>2025 Apr 12.
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