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Tracing the spatial origins and spread of SARS-CoV-2 Omicron lineages in South Africa.

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Title: Tracing the spatial origins and spread of SARS-CoV-2 Omicron lineages in South Africa.
Authors: Dor G; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Wilkinson E; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Martin DP; Division of Computational Biology, Department of Integrative Biomedical Sciences, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa., Moir M; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Tshiabuila D; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Kekana D; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa., Ntozini B; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa., Joseph R; Division of Medical Virology, Department of Pathology, University of Cape Town, Cape Town, South Africa., Iranzadeh A; Computational Biology Division, University of Cape Town, Cape Town, South Africa., Nyaga MM; Next Generation Sequencing Unit and Division of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa., Goedhals D; Division of Virology, University of the Free State, Bloemfontein, South Africa.; PathCare, Pretoria, South Africa., Maponga T; National Health Laboratory Service, Tygerberg, Cape Town, South Africa.; Division of Medical Virology, Faculty of Medicine & Health Sciences, Stellenbosch University, Stellenbosch, South Africa., Maritz J; Division of Medical Virology, Faculty of Medicine & Health Sciences, Stellenbosch University, Stellenbosch, South Africa.; PathCare Reference Laboratory, Cape Town, South Africa., Laguda-Akingba O; National Health Laboratory Service, Port Elizabeth, South Africa.; Department of Laboratory Medicine and Pathology, Faculty of Health Sciences, Walter Sisulu University, Eastern Cape, South Africa., Ramphal Y; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., MacIntyre C; Emerging Viral Threats, One Health surveillance and vaccines (EViTOH) Division, Infectious Disease and Oncology Research Institute (IDORI), School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa., Chabuka L; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Pillay S; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Giandhari J; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Baxter C; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Hsiao NY; Division of Medical Virology, Department of Pathology, University of Cape Town, Cape Town, South Africa.; National Health Laboratory Service, Cape Town, South Africa., Preiser W; National Health Laboratory Service, Tygerberg, Cape Town, South Africa.; Division of Medical Virology, Faculty of Medicine & Health Sciences, Stellenbosch University, Stellenbosch, South Africa., Bhiman JN; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.; South African Medical Research Council Antibody Immunity Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa., Davies MA; Centre for Infectious Disease Epidemiology and Research, School of Public Health, University of Cape Town, Cape Town, South Africa.; Health Intelligence, Western Cape Government Health and Wellness, Cape Town, South Africa., Venter M; Emerging Viral Threats, One Health surveillance and vaccines (EViTOH) Division, Infectious Disease and Oncology Research Institute (IDORI), School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.; Centre for Emerging Arbo and Respiratory Virus Research (CEARV), Department of Medical Virology, University of Pretoria, Pretoria, South Africa., Treurnicht FK; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa., Wolter N; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa., Williamson C; National Health Laboratory Service, Cape Town, South Africa.; Institute of Infectious Disease and Molecular Medicine and Wellcome Centre for Disease Research in Africa, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa., von Gottberg A; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.; Division of Medical Microbiology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa., Lessells R; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Tegally H; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa. houriiyah@sun.ac.za., de Oliveira T; Centre for Epidemic Response and Innovation (CERI), School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa. tulio@sun.ac.za.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa. tulio@sun.ac.za.
Source: Nature communications [Nat Commun] 2025 May 28; Vol. 16 (1), pp. 4937. Date of Electronic Publication: 2025 May 28.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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