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varVAMP: degenerate primer design for tiled full genome sequencing and qPCR.

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Title: varVAMP: degenerate primer design for tiled full genome sequencing and qPCR.
Authors: Fuchs J; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany. jonas.fuchs@uniklinik-freiburg.de., Kleine J; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany., Schemmerer M; Institute of Clinical Microbiology and Hygiene, National Consultant Laboratory for HAV and HEV, University Medical Center Regensburg, Regensburg, Germany., Kreibich J; National Reference Center for Poliomyelitis and Enteroviruses, Robert Koch Institute, Berlin, Germany., Maier W; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany., Battur N; Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany., Krannich T; Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany., Sedaghatjoo S; Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany., Jaki L; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany., Maks A; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany., Boehm C; Institute of Clinical Microbiology and Hygiene, National Consultant Laboratory for HAV and HEV, University Medical Center Regensburg, Regensburg, Germany., Wilhelm C; Institute of Clinical Microbiology and Hygiene, National Consultant Laboratory for HAV and HEV, University Medical Center Regensburg, Regensburg, Germany., Schulze J; Unit 17 'Influenza and Other Respiratory Viruses', Robert Koch-Institute, Berlin, Germany., Mache C; Unit 17 'Influenza and Other Respiratory Viruses', Robert Koch-Institute, Berlin, Germany., Berger E; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany., Panajotov J; Department of Biological Safety, German Federal Institute for Risk Assessment (BfR), Berlin, Germany., Arnold L; Institute of Clinical Microbiology and Hygiene, University Hospital Regensburg, Regensburg, Germany., Grüning B; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany., Bauswein M; Institute of Clinical Microbiology and Hygiene, University Hospital Regensburg, Regensburg, Germany., Böttcher S; National Reference Center for Poliomyelitis and Enteroviruses, Robert Koch Institute, Berlin, Germany., Johne R; Department of Biological Safety, German Federal Institute for Risk Assessment (BfR), Berlin, Germany., Wenzel J; Institute of Clinical Microbiology and Hygiene, National Consultant Laboratory for HAV and HEV, University Medical Center Regensburg, Regensburg, Germany., Hölzer M; Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany., Panning M; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany. marcus.panning@uniklinik-freiburg.de.
Source: Nature communications [Nat Commun] 2025 May 31; Vol. 16 (1), pp. 5067. Date of Electronic Publication: 2025 May 31.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Fuchs+J%22">Fuchs J</searchLink>; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany. jonas.fuchs@uniklinik-freiburg.de.<br /><searchLink fieldCode="AU" term="%22Kleine+J%22">Kleine J</searchLink>; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.<br /><searchLink fieldCode="AU" term="%22Schemmerer+M%22">Schemmerer M</searchLink>; Institute of Clinical Microbiology and Hygiene, National Consultant Laboratory for HAV and HEV, University Medical Center Regensburg, Regensburg, Germany.<br /><searchLink fieldCode="AU" term="%22Kreibich+J%22">Kreibich J</searchLink>; National Reference Center for Poliomyelitis and Enteroviruses, Robert Koch Institute, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Maier+W%22">Maier W</searchLink>; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany.<br /><searchLink fieldCode="AU" term="%22Battur+N%22">Battur N</searchLink>; Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Krannich+T%22">Krannich T</searchLink>; Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Sedaghatjoo+S%22">Sedaghatjoo S</searchLink>; Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Jaki+L%22">Jaki L</searchLink>; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.<br /><searchLink fieldCode="AU" term="%22Maks+A%22">Maks A</searchLink>; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.<br /><searchLink fieldCode="AU" term="%22Boehm+C%22">Boehm C</searchLink>; Institute of Clinical Microbiology and Hygiene, National Consultant Laboratory for HAV and HEV, University Medical Center Regensburg, Regensburg, Germany.<br /><searchLink fieldCode="AU" term="%22Wilhelm+C%22">Wilhelm C</searchLink>; Institute of Clinical Microbiology and Hygiene, National Consultant Laboratory for HAV and HEV, University Medical Center Regensburg, Regensburg, Germany.<br /><searchLink fieldCode="AU" term="%22Schulze+J%22">Schulze J</searchLink>; Unit 17 'Influenza and Other Respiratory Viruses', Robert Koch-Institute, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Mache+C%22">Mache C</searchLink>; Unit 17 'Influenza and Other Respiratory Viruses', Robert Koch-Institute, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Berger+E%22">Berger E</searchLink>; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany.<br /><searchLink fieldCode="AU" term="%22Panajotov+J%22">Panajotov J</searchLink>; Department of Biological Safety, German Federal Institute for Risk Assessment (BfR), Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Arnold+L%22">Arnold L</searchLink>; Institute of Clinical Microbiology and Hygiene, University Hospital Regensburg, Regensburg, Germany.<br /><searchLink fieldCode="AU" term="%22Grüning+B%22">Grüning B</searchLink>; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany.<br /><searchLink fieldCode="AU" term="%22Bauswein+M%22">Bauswein M</searchLink>; Institute of Clinical Microbiology and Hygiene, University Hospital Regensburg, Regensburg, Germany.<br /><searchLink fieldCode="AU" term="%22Böttcher+S%22">Böttcher S</searchLink>; National Reference Center for Poliomyelitis and Enteroviruses, Robert Koch Institute, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Johne+R%22">Johne R</searchLink>; Department of Biological Safety, German Federal Institute for Risk Assessment (BfR), Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Wenzel+J%22">Wenzel J</searchLink>; Institute of Clinical Microbiology and Hygiene, National Consultant Laboratory for HAV and HEV, University Medical Center Regensburg, Regensburg, Germany.<br /><searchLink fieldCode="AU" term="%22Hölzer+M%22">Hölzer M</searchLink>; Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Panning+M%22">Panning M</searchLink>; Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany. marcus.panning@uniklinik-freiburg.de.
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